Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2445 ATGACATCGGAAAATCCCTATGAAATCATGGACGACGACGAGGATAATGAGGGTTTTGATTGGGAAGCAGCTGCAAGAGAAATCGACGTCGTTTGCCACCAACGGACCAACGCCGGCAGTGGCAGTGACAGTTACACGAAGGGAGAGGGACCCGCCACATCCAGGCAATCCACTCTCGATAAGTTTCTGGAATCTTCCAAGAAACAAACCTCAATGCCTCATTCTCATTTCCAAGATGAAGATGAAGGCTCCACCTGCCTCGACCACATTGACGCCGACGCAGCAAAAACTTGGATATACCCAGTTAATGTTCCTCTCCGTGACTATCAATTTACTATTACCCAGTCCGCACTCTTTTCAAACACACTTGTCGCCTTGCCAACGGGACTTGGCAAAACACTCATTGCTGCCGTTGTTATGTATAACTACTTCAGATGGTTTCCTCAAGGAAAAATAGTCTTTGCTGCTCCTTCTCGACCACTTGTCATGCAGCAGATAGAAGCATGCCATAATATTGTGGGAATACCTCAAGAATGGACAATTGATATGACTGGTCAAATAAGTCCTCCCAAAAGAGCTTGTTTCTGGAAAACAAAGCGAGTTTTCTTTGTCACCCCACAAGTGTTAGAGAAGGATATTCATTCTGGCACCTGTTTGGTGAAGCACTTGGTATGTTTGGTTATTGATGAAGCTCACAGAGCAACTGGAAATTACTCTTATTGTGAAGCAGTCCGTCAGTTAATGGCTGTACCAGTGCAACTTAGAATATTAGCATTAACTGCAACGCCAGGATCAAAGAAGCAGACGGTCCAGGATGTCATTGATAATCTGCATATCTCCAGGCTTGAATATCGCAGTGAAACTAACCTTGATGTTATCTCATATGTTCACAACAGGAAGATAGAGTTGATAGAGGTTGCAATGGGCCAAGATGCTGTAGACATAAACAATAAGTTTTTGGAAGTCATACGCCCAATAGTAGCCAGGCTTAATGATATTGGGGTCATTCAGAATAGAAATTATCGCACTTTAAGCCCTTGTGTATTACTTGAAATAAGGGAAAAGTTTCGTCAGGGACCTAGGCAAGATCTTTCGCATGTTAACTATGCAGATATTGAAGGCTATTTTGGAGTTCTTATCACTCTTTATTACATCCATAAGCTACTTTCAAGTCATGGAATAAGGCCAGCACATGAAATGCTTGAAAGAAAATTGAAGCAAGGATTTTTTGCGAAATTTATGAGTAAAAATGAAGTTATTCTGAAAGCAAGACAACTGATGCAGCAAAGCTTGTCTCATGGAGCATCTAGTCCCAAGCTGTCCAAAATGCTAGAAGTATTACTGGAGCATTTCAAAATCAATGATCCGCAAAGTTCAAGGGTAATAATTTTCTCCAATTATAGAGAAAGTGTCAGGGACATAATGAATGCACTTGGAGACATTGGGGAACCGGTCAAAGCTACCGAGTTTATTGGTCAAAGTTCAGGGAAAGCAATGAAAGGTCAGTCCCAGAAAGTTCAACAGGCTGTGCTGAAGAAATTTCGGTCTGGTGCCTACAATGTCATTGTTGCTACATCAATTGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTTGTCATATCTTTCGATGCCAATATTTCGCCACTTAGAATGATTCAGCGAATGGGGAGAACAGGAAGAAAGCATGATGGTAGAGTTGATATCCTTTGGTCGCCAGTTTTATGTTTACTGGCAATTGTTAATATGAGAATCCTAGATGTTCTTTACTGCTATCTTCAGAGAATTGCGTCTTGGAATTTTCATTTTGTGTTCTTAAAACCGAGGTTGTATTGTTCGTTTATGTGA 1848 0.4129 MTSENPYEIMDDDEDNEGFDWEAAAREIDVVCHQRTNAGSGSDSYTKGEGPATSRQSTLDKFLESSKKQTSMPHSHFQDEDEGSTCLDHIDADAAKTWIYPVNVPLRDYQFTITQSALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQISPPKRACFWKTKRVFFVTPQVLEKDIHSGTCLVKHLVCLVIDEAHRATGNYSYCEAVRQLMAVPVQLRILALTATPGSKKQTVQDVIDNLHISRLEYRSETNLDVISYVHNRKIELIEVAMGQDAVDINNKFLEVIRPIVARLNDIGVIQNRNYRTLSPCVLLEIREKFRQGPRQDLSHVNYADIEGYFGVLITLYYIHKLLSSHGIRPAHEMLERKLKQGFFAKFMSKNEVILKARQLMQQSLSHGASSPKLSKMLEVLLEHFKINDPQSSRVIIFSNYRESVRDIMNALGDIGEPVKATEFIGQSSGKAMKGQSQKVQQAVLKKFRSGAYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVDILWSPVLCLLAIVNMRILDVLYCYLQRIASWNFHFVFLKPRLYCSFM* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2445 615 SMART helicmild6 469 563 IPR001650 -
Dod03g2445 615 PANTHER FANCONI ANEMIA GROUP M PROTEIN 18 569 IPR039686 GO:0006281|GO:0043138
Dod03g2445 615 MobiDBLite consensus disorder prediction 35 65 - -
Dod03g2445 615 Gene3D - 102 296 IPR027417 -
Dod03g2445 615 CDD FANCM_ID 313 427 - -
Dod03g2445 615 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 18 569 - -
Dod03g2445 615 CDD DEXDc_FANCM 104 285 IPR044749 GO:0005524
Dod03g2445 615 Pfam Type III restriction enzyme, res subunit 119 263 IPR006935 GO:0003677|GO:0005524|GO:0016787
Dod03g2445 615 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 439 597 IPR001650 -
Dod03g2445 615 SMART ultradead3 102 302 IPR014001 -
Dod03g2445 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 572 IPR027417 -
Dod03g2445 615 MobiDBLite consensus disorder prediction 1 21 - -
Dod03g2445 615 Gene3D - 433 574 IPR027417 -
Dod03g2445 615 Gene3D hef helicase domain 310 432 - -
Dod03g2445 615 Pfam Helicase conserved C-terminal domain 449 562 IPR001650 -
Dod03g2445 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 421 IPR027417 -
Dod03g2445 615 CDD SF2_C_FANCM_Hef 437 570 - -
Dod03g2445 615 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 113 281 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2445 Dod-Chr3 55930501 55939825 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2445 412 561 Eukaryotic Initiation Factors Gene Family AT3G13920 26.974 2.33e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2445 K10896 - gmx:100820078 951.429