Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2441 ATGTTAGACGGATCCTGTTTTTATTATGTGGTTTTGTTGTTGTTACTGTTGTTGGCAAGTGCTTTGGATTCTTTCTTTCCTTTGACAAGTGATGATCCTCATTTTGCAGATGTGTCATCGAGGTCTTACTATGAGCCTATTCTTGTGACTGACTTCGTTACAAAACATTTTAATTTCAATTTGTCGAGGCCCCTCTCTGATCAGGATCGTGTTCTGATCAAGAAAACATTGAGAGGAGTTAAGGTAGAAGTCCACCTAAATGAATATACTAGAGATGACAAGAAAACAAAAACATCTGTAGTTCAATATTTCCGTGAGAAATACCGAACTGAGTTGAAGTATTTGAATCTTCCTGCGATCCAAGTTGGAAGTGATGCAAAACCTGTTTATTTGCCTATGGAGGTTTGTCAGATTGCAGCTGGACAGAGGTATACCAAGAGACTATCTGAGGCTCAAGTAGCAGCTCTTCTGAGGGCAAATTGTCAGCGGCCTTATGAAAGAGAAAAGGACGTTAGACAGGTTGGCGGTAGAAACACAGTGTTAGAGGATGCAGCTCGGTTTACAACTCCTCTTGTTTCTGAAAAACCAAGTGCTGAAATATCCGGTCACTGTTACTCACATGAGGATGACTTCCTCAAGGTTACACCTAGGAAGACAATTGAAGAACTGAAATATCGTAGAGAAGATGGTGACTATGCTGTCTATGCTACAATTAAGGGTGTGGATGGTGGACCTAATTGGTTTATTACAGCATGTAGATGTGGTACTGAAGTGGTTCCTCAATCAGGGTCTTACTACTGTGATAAGTGTGAAAAGCATGTGGTGAATGTGATTCCGAGGTACAAAATTAAGGCTAGAGTTATTGATGCTTTAGACAGTGCAACTTTTGTGATATCTGAAAATCTTGGATGCTTATTGCTGCACAAGTCCTGTACTGAGATGTTGAAATCTACTGAAAATGATGGTTTGAACCTAAGTCAACCCTTAGCATTTCAACAAATGTTGATTGATAGATCATTCATTTTCAAGGTTGAGGTTAAGAATAGCTGTTTCAATGAGTTAGAACCATCATATGATGTCATTGACATTTGTTTTAATGATTCGATCATCTCACAGTTCAAAGATCTGAATCCTGCCTTTTTTTCTGCTCAGGATTTGATGAAGGAATTTGATCAATCTGGAAGTGGAGCTCCACTTTTAACCCTTGCAAAAAGAGTGTCCAATGAAATGCTTGTTATACCTGATGGATAG 1251 0.3901 MLDGSCFYYVVLLLLLLLASALDSFFPLTSDDPHFADVSSRSYYEPILVTDFVTKHFNFNLSRPLSDQDRVLIKKTLRGVKVEVHLNEYTRDDKKTKTSVVQYFREKYRTELKYLNLPAIQVGSDAKPVYLPMEVCQIAAGQRYTKRLSEAQVAALLRANCQRPYEREKDVRQVGGRNTVLEDAARFTTPLVSEKPSAEISGHCYSHEDDFLKVTPRKTIEELKYRREDGDYAVYATIKGVDGGPNWFITACRCGTEVVPQSGSYYCDKCEKHVVNVIPRYKIKARVIDALDSATFVISENLGCLLLHKSCTEMLKSTENDGLNLSQPLAFQQMLIDRSFIFKVEVKNSCFNELEPSYDVIDICFNDSIISQFKDLNPAFFSAQDLMKEFDQSGSGAPLLTLAKRVSNEMLVIPDG* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2441 416 Gene3D paz domain 47 146 - -
Dod03g2441 416 PANTHER PROTEIN ARGONAUTE MEL1 37 183 - -
Dod03g2441 416 SUPERFAMILY Nucleic acid-binding proteins 215 364 IPR012340 -
Dod03g2441 416 SUPERFAMILY PAZ domain 44 174 IPR036085 GO:0005515
Dod03g2441 416 Pfam PAZ domain 93 156 IPR003100 GO:0005515
Dod03g2441 416 Gene3D - 208 370 IPR012340 -
Dod03g2441 416 Pfam Replication factor-A C terminal domain 233 353 IPR013955 -
Dod03g2441 416 ProSiteProfiles PAZ domain profile. 89 140 IPR003100 GO:0005515
Dod03g2441 416 CDD RPA1_DBD_C 232 363 IPR013955 -
Dod03g2441 416 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 37 183 - -
Dod03g2441 416 CDD PAZ_argonaute_like 49 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2441 Dod-Chr3 55864733 55867366 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2441 37 174 Eukaryotic Initiation Factors Gene Family AT1G48410 46.541 4.51e-34 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2441 K11593 - adu:107489307 263.462