Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2440 ATGTCTCGCCGTAACCAACCAACTCCGCCTGAGTCCGCCGGCAGAGGACGCGGCCGTGGCCGCGGCCGAGCCTCCGCGGGACAAGGCCGCGGACAGCCTTACGTTCCCGTCACTCGTCCTCCGCCACCGGTACCTTCTCCATCGCCCGCTCCTCCTCCGGCAGCGGTTATCGGTTCGCCGGCACAGGCTCATGCTGCTGCTTCTGCCTCGAGTTCTTCTGCTCCGCCGCCGGCTCCGGTGACGGAGGAGGTTCTGAGTGCAGACGTTGAGAAACTCGCATTGCAACCGGCGGAGACCGCGCTTCCGCCGTCGTCGTCGAAGGCGGTGCGCTTCCCTAGACGACCAGGCTACGGCACCGTTGGAAGGAAGATCCAAGTTCGCGCAAATCATTTCCTCGTTCAGGTCTCCGATCGCGACCTGCATCATTACGATGTTGCGATTACTCCGGAGGTTACTTCGAAGAGCTTATGCAGAGCTTTGATGAACCAGCTCGTACGGATGCACCAGAACACCGTCCTTGGGAACCGCATTCCAGTTTACGATGGGCGAAAGAGTATTTACACTGCAGGAGCGTTACCGTTCCACTCGCAAGAGTTTGTGGTGAAGCTGGATGATGACAATGATCGGAAAGGCGCTTCGTCTTCTGGTTCAGCCAGCAAAAAACGCGAACGCGAGTTCAAGGTGACAATCCGATTGGCTGCTAAGAAGGACCTTTATCAACTTCAGCAGTTTCTTAGGCGCCAACAGCTGGACTGTCCGTATGAAACTATACAAGCTCTTGACGTTGCGTTGCGGGCATCTCCAACGGAAAAGTATAATATTTCGGGGAGGTCATTTTTCTCGCCGGAGTTGGGGAGGACAGGGTCGCTTGGAGGAGGCGTAGAGTACTGGAAGGGATATTATCAAAGCCTCCGCCCAACCCAGATGGGGCTTTCGCTTAACATAGATGTGTCATCGAGGTCTTACTATGAGCCTATTCTTGTGACTGACTTCGTTACAAAACATTTTAATTTCAATTTGTCGAGGCCCCTCTCTGATCAGGATCGTGTTCTGATCAAGAAAACATTGAGAGGAGTTAAGGTAGAAGTCCACCTAAATGAATATACTAGAGGTTACAAAGTCATTGGAGTTTCAAAGGAGCCATTAAAAGAGTTAATGTTTACACTTGATGACAAGAAAACAAAAACATCTGTAGTTCAATATTTCCGTGAGAAATACCGAACTGAGTTGAAGTATTTGAATCTTCCTGCGATCCAAGCTGGAAGTGATGCAAAACCTGTTTATTTGCCTATGGAGGTTTGTCAGATTGCAGCTGGACAGAGGTATACCAAGAGACTATCTGAGGCTCAAGTAGCTGCTCTTCTTAGGGCAAATTGTCAGCGGCCTTATGAAAGAGAAAAGGACATTAGACAGATTGTCAGGCAGAACAATTTCAACACAGATAAGCATGCAAGGGAATTTGGAATGAAAGTAGCAGAGGAACTAGCGTTGGTTGATGCCCGAGTCTTGCCTCCCCCAATGCTTAAATATCATGACACGGGGAGAGAGAAAATGGTTGAACCGCAGATGGGTCAGTGGAATATGATTAACAAGAAAATGTATTCTGGTGGGCAAGTGCAATTTTGGACGTGTCTCAACTTCTCTACAAGAGTGAACAGGGATGTGCCATTTCAGTTTTGTAATGAATTGGTCAATATGTGTACTAGCAAGGGAATGCTTTTCAACCGAGAGCCTTTAATCCCTATAACTTCAGCGCAACCTCGTGAAATAGAGAGAGCTCTTGTGGATCTGCATAAAAGGCTTGCAAACATGAAACAGGATGGGAAACTTCAGTTATTGATAATTATTTTACCTGATTTCAGGGGGTCTTATGGAAAAATTAAGCGTATATGTGAAACAGAACTTGGAATAGTTTCTCAGTGCTGTCAGCCAAACCATGCTTCAAGCATGAAAAAGCAGTATCTTGAAAATGTGGCCCTCAAGATAAATGTCAAGGTTGGCGGTAGAAACACAGTGTTAGATGATGCAGCTCGGTTTAGAATTCCTCTTGTTTCTGATAAACCCACTTTAATCTTGGGTGCGGATGTAACCCATCCCCAACCAGGGGAAGACTCAAGTCCTTCTATAGCTGCAGTAGTGGGTTCCATGGATTGGCCTTTGATCACACAGTATAGAGGAATTGTTTCTGCCCAGCATCACCGTGAAGAAATTATTCAGGACCTTTATAAATCTTTTCAGGATCCAAATAGGGGCCTTGTGCATGGAGGGATGATCCGGGAGCTACTCATTGCATTTTATAAATCAACTAAACGGAAGCCTGACAGGATTATATTCTACAGAGATGGAGTTAGTGAGGGTCAGTTCAGTCAGGTTTTGCTTCATGAGATCGATGCAATAAGGAAGGCTTGTGTCTCGTTAGAGGAGAATTATCTGCCCAAAGTTACCTTTGCCGTGGTACAGAAAAGACATCACACCCGTCTCTTCCCTGTTAGCCGTGATCAGACGGATAGAAGTGGAAACATAATGCCAGGAACTGTGGTTGACACCAAAATCTGTCACCCTTCTGAGCATGACTTCTACCTCAACAGCCATGCCGGAATTCAAGGAACTAGTCGACCCACTCATTATCATATGCTGTATGATGAAAATAACTTCTCTGCAGATGGCTTCCAGATTTTGACCAATAATTTATGTTATACGTATGCAAGGTGCACTAGATCTGTTTCAATAGTTCCTCCTGCATACTATGCGCACTTGGCAGCCTTTCGAGCTCGCTACTACATTGAGAGTGAAATATCAGAAGGTGGTTCTGGAAGTAGGGGCACTAACGTGGTGTTAACATTGCCCTCGGTCAAGGACAATGTCAAAGAAGTAATGTTTTATTGCTGA 2889 0.468 MSRRNQPTPPESAGRGRGRGRGRASAGQGRGQPYVPVTRPPPPVPSPSPAPPPAAVIGSPAQAHAAASASSSSAPPPAPVTEEVLSADVEKLALQPAETALPPSSSKAVRFPRRPGYGTVGRKIQVRANHFLVQVSDRDLHHYDVAITPEVTSKSLCRALMNQLVRMHQNTVLGNRIPVYDGRKSIYTAGALPFHSQEFVVKLDDDNDRKGASSSGSASKKREREFKVTIRLAAKKDLYQLQQFLRRQQLDCPYETIQALDVALRASPTEKYNISGRSFFSPELGRTGSLGGGVEYWKGYYQSLRPTQMGLSLNIDVSSRSYYEPILVTDFVTKHFNFNLSRPLSDQDRVLIKKTLRGVKVEVHLNEYTRGYKVIGVSKEPLKELMFTLDDKKTKTSVVQYFREKYRTELKYLNLPAIQAGSDAKPVYLPMEVCQIAAGQRYTKRLSEAQVAALLRANCQRPYEREKDIRQIVRQNNFNTDKHAREFGMKVAEELALVDARVLPPPMLKYHDTGREKMVEPQMGQWNMINKKMYSGGQVQFWTCLNFSTRVNRDVPFQFCNELVNMCTSKGMLFNREPLIPITSAQPREIERALVDLHKRLANMKQDGKLQLLIIILPDFRGSYGKIKRICETELGIVSQCCQPNHASSMKKQYLENVALKINVKVGGRNTVLDDAARFRIPLVSDKPTLILGADVTHPQPGEDSSPSIAAVVGSMDWPLITQYRGIVSAQHHREEIIQDLYKSFQDPNRGLVHGGMIRELLIAFYKSTKRKPDRIIFYRDGVSEGQFSQVLLHEIDAIRKACVSLEENYLPKVTFAVVQKRHHTRLFPVSRDQTDRSGNIMPGTVVDTKICHPSEHDFYLNSHAGIQGTSRPTHYHMLYDENNFSADGFQILTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIESEISEGGSGSRGTNVVLTLPSVKDNVKEVMFYC* 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2440 962 Pfam Mid domain of argonaute 521 599 IPR032473 -
Dod03g2440 962 PANTHER PROTEIN ARGONAUTE 1A 58 948 - -
Dod03g2440 962 Gene3D - 502 675 - -
Dod03g2440 962 SUPERFAMILY PAZ domain 323 479 IPR036085 GO:0005515
Dod03g2440 962 MobiDBLite consensus disorder prediction 35 56 - -
Dod03g2440 962 Pfam Argonaute linker 2 domain 464 510 IPR032472 -
Dod03g2440 962 SMART Piwi_a_2 612 929 IPR003165 GO:0003676
Dod03g2440 962 SUPERFAMILY Ribonuclease H-like 602 929 IPR012337 -
Dod03g2440 962 Pfam Argonaute linker 1 domain 276 323 IPR014811 -
Dod03g2440 962 Pfam N-terminal domain of argonaute 122 264 IPR032474 -
Dod03g2440 962 Pfam Piwi domain 614 928 IPR003165 GO:0003676
Dod03g2440 962 Pfam PAZ domain 347 454 IPR003100 GO:0005515
Dod03g2440 962 SMART DUF1785_2 273 325 IPR014811 -
Dod03g2440 962 SMART PAZ_2_a_3 330 460 IPR003100 GO:0005515
Dod03g2440 962 CDD Piwi_ago-like 482 928 IPR045246 -
Dod03g2440 962 ProSiteProfiles PAZ domain profile. 326 438 IPR003100 GO:0005515
Dod03g2440 962 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 58 948 - -
Dod03g2440 962 CDD PAZ_argonaute_like 328 437 - -
Dod03g2440 962 MobiDBLite consensus disorder prediction 1 81 - -
Dod03g2440 962 Gene3D paz domain 326 441 - -
Dod03g2440 962 Gene3D - 680 962 IPR036397 GO:0003676
Dod03g2440 962 ProSiteProfiles Piwi domain profile. 612 929 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2440 Dod-Chr3 55826493 55832177 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2440 64 962 Eukaryotic Initiation Factors Gene Family AT1G48410 57.573 0.0 1073
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2440 K11593 - gmx:100805246 1243.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2440 03 55826493 55832177 Dod03g2440 03 55826493 55832177 ECH