Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2428 ATGGAGCCTCCGGTTGTTAGATCGAGAGGGAGGCCGCGGAAGAGAAGAAGAAAAGAGGACGAAATCGAAGGCTTGGAAGCGAAGAGGCAAGCCTTGGCGACGAGATCGATAGCATTGGTTGGGAGATTCGTGCTGAAGGAGTTCCCGAGAAACGGTGTTTTTCTCGGGAAAGTTGTGTACTACGAGTGCGGTTTGTATAGGGTTACTTATGAGGACGGTGATTTCGAGGATTTGGATAGTGGCGAGGTTCGTGCGATTCTCCTTAATGACAGTGATTTCGACGATGATTTGACTCTTAGGAAGGGGAAATTGGAGGAGTTTTTATTAGTGTCGCAGAAAAGTGTAAAAGTTTCAGATGAATCGGTGAAAGATGAATCCAAGGTTGATGCACCTGTTTCGAGTGAATTGAATGGTGAGAAAGATGAGGAACAAGATGGAGAAGGGAGTGATGGTTTGTCAAGTGATGACTATTCTGGTTCTGATGTGGAGGCGGTGGCGGCGCCACCGCTGCCACCATTGTTGCAGCTGCCGCCATCTTCGGGGACTGTTGGCGTGCCGGAGCAGTGTATTTCGCTGCTGTTTTCTGTTTATGGGTTCCTTAGATCGTTCAGCACTAGGCTGTTCCTGTTCCCTTTTACTTTGGATGAGTTTGTTGGTTGTCTCAATTGCCGAGTTGCGAATAACTTGATTGATGGCATTCATGTTTCACTGATGCGGCCATTGAGGCATCACCTTGAATCTCTTTCATCTGAGGGCTCAGACCTTGCTTTGAAATGCCTTAGGTGCCATGATTGGAGCTTGCTTGATACATTGACTTGGCCTGTTTTTGTGATTCAGTATTTAGTAGTTAATGGGCACACAAAAGGACCTGAATGGAAAGGATTTTATGATGAGGTTTTTGCTGGGGAGTACTATTTATTGCCTGTAAGTAGGAAGTTAATGATATTGCAAATTCTCTGTGATGATGTCTTGGACTCAGAGGAGCTAAAAGCTGAAATGAACATGCGCGAAGAATCAGAGGTTGGGTTGGATTATGATGCAGAAGATATCCTTCCTGCAGAACCTGTGCCAAGAAGAGGGCGTCCAAGATATGCTCAGACTTCTTGTGAGGATAAAGGAGCTATGAAGTTGGTTTCAGCATCAAATGCTGTGAACCAACCTGGTAACTCTACTTCGAATTCTAGAGGTACAGGAAATGCTGATGATGGTGATATAGATAGAAATGGAGATGAATGTCGCCTCTGTGGTATGGATGGTACCCTGCTTTGTTGTGATGGGTGTCCCTCTGCTTATCATTCGAGGTGTATTGGTGTGATGAAAATGCATATACCAGAAGGGCCGTGGTATTGTCCAGAGTGCAAAATTAATATGACTGGGCCAACAGTTGCAAAGGGAATGCCACTTAGAGGGGCTGAAATATTTGGGAAGGATTTTTATGGGCAACTCTTCATGGGTACTTGCGACCACTTACTGGTGCTCAATATCAACAATGATGAGTTTTGTCTTAAATATTACAATCAGGATGACATTCCTAAAGTTCTCCAAGTGCTTTATGGATCCCTGCAGCATAGAACAATATACTATGATATCTGCATGGCAGTGATGCAATATTGGAATATTCCTGAAAGCATCTCGCCTCTTCCTCCTCCTTTAGGTGAAGACAACCATAAACCTGTTAGTTTGGTGAATGGAGAGTACTTTCTGAACAATCTGAGTTTGATGGATAGTGATAACACATTGCCTTCTCTTGATGCTTCAACAGCTACTACTGAAAGTCATGCTCCTGACAGCAGCAGCAATGCTAGTAGTAAAGAATGCCCCACCATAAATACGAAGCTTCCCGAGGAAACTAGGATGGAATCAGTCATCTCAGCTGGTTCTGGTTCTGTTTCTGTTTCTGTTAGTCATCAGTCTGATGTGAACTGCCAAAGTTCTGTTAATAGGTCGATTGTGGTGGCTCCTACTGCATGCTCTTTATTAAACAGCCAATATAGTAATTATGGCCAGGCTAATGGTATGGTACTGCCTATGAATTTTTCTTTGCAAACCAAAGAAAGCACCCGAGTTGGTTTTGGGAAGTTTGAACACAATACAACTAATGATTTTGGGCACATGGGTTTCTCCTATAAGCCTTTGTCTTACATTAATTACTATATGCATGGTGATTTTGCTGCATCAGCAGCTGCTAAACTGGCCATTCTTTCTTCAGAAGAATCTAGGACAGAGGGTCATGTGTCAGACAGTCAGAGGAAAACAATATCGGCAAACACTTATTTGCAAGCAAAAGCATTTTCACTAACAGCGTCGCGTTTCTTTTGGCCAGCTGTTGAAAAGAAGCTTGTGGAGGTTCCAAGAGAGAGGTGTGGCTGGTGCTTTTCTTGTAAAGCTCCTGTTTCAAGCAAGAGAGGGTGCATGTTGAATCATGCTGTTATAAGTGCCACAAAAAGTGCTATGAAAGTCCTTGCTGGTTTTTCTACAGTAAGGAGTGGAGAGGGAATCCTTCCGAGTATTGCCACATACATTATGTACATGGAGGAATGCTTACATGGTTTAATAGTTGGGCCTTTCCTAAGTGCAAGCTATAGAAAGCAATGGCGTAAGCGAGTGGAACAGGCCACGACATATAGTGCTATTAAGCCGCTTTTACTTGAGCTTGAGGAGAACATTCGCGTGATTGCGTTTTCTGGGGACTGGGTTAAGTTGATGGATGATTGGTTGGTTGAATTTTCCATGATACAAAGTGCTGCATCTACTCTTGGAACAGCACAGAAACGTGCACCAAGTGGGAGACGTAACAAGAAGCGCTCAGCTAATGATGAAGTTATCGCTGATGGTTGCCATGAAAACATTGAGTGGTGGCGCGGTGGCAAATTCACCAAATTTATATTCCAAAATGCAGTTTTGCCAAAATCAATGGTCAGGAAAGCAGCTCGCCAAGGTGGTTTGAGGAAAATTGCTGGTATTTTCTATGGTGATGGCTCTGAAATCCCTAAAAGAACCAGGCAGTTAGTTTGGAGAGTTGCAGTTCAAATGAGTAGGACTGCATCACAGCTGGCACTTCAGGTCAGATATCTAGATTTTTATATCAGATGGAGTGATCTGATTCGTCCAGAGCAGAATATCCAGGATGGTAAAGGTCAAGAAACTGAAGCTTCTGCTTTCAGAAATGCAAATATTTGTGATAAAAAACTTATAGAGGGAAAAAGTTGTTATGGAGTAGCATTTGGGAGCCAAAAGCATCTTTCTACTCGGGTAATGAAAAATGTTATTGAAATAGAGCAAGGTACAGAAGGAAAAGAAAAATATTGGTTTTCCGATACACGCATTCCCTTATATTTGGTAAAAGAGTATGAAGAAGGTAATGGAAAAGTGCCATCACTTGAAGAGCACTTGAATAATGCACCCCATCAGTTGCACAATCGGCAGTTGAAAGCAACCCGCACGGACATTTTCTTTTACCTTGCCTGCAAGAGAGACAAGTTGGGCATGTTCTTGTGTTCTGTATGTCAGACAGGTGTTCTATTAAGGAATGTGCTCCAGTGCAATGCATGTCAAGGTTTTTGTCATGAGAGCTGTTCCATAAGTTCAACCATTTCTGCAAATAAGAAAGTCGAGTACTTGACCACATGCAACCAATGTTACCATGCCAAGTTACTCGCTCAAAAAGAGACCAGTAATGAATCTCCAACCAGTCCCTTACTCCTACAAGGGCGTGAAAATAGCTCTGTGACAGCCTTGAAGGGACCAAGGCCTAAAAGTTTTGATCAAGCACAGAAATCTGCCAGGACAAAAGATAGTCGTCCTGACATAAAACAAGTTTCTATGACTGCTTCAAAGGGAACAATGCCTAGATGTAATGATCAAGCACTAACTACTCCGAGGTCAAAGGATGGTCATCCTGATACTAAACAAGTTGCTTCTGGTTCCACGGCAGCTAAAAGCCGTCGCAAGAATTGTTCTTGGGGTGTTATATGGAGAAAGAAAAATACCGATGGAACCGGTGTTGATTTCAGGCTCAAAAACATACTTTTAAAGGGAGGCTCGGGCTTTCCTCAATTGGAACCTGTTTGTCACTTGTGCCGTAAGCCATACAGGTCTGATCTGATGTATATTCACTGTGAGACCTGCCGAAATTGGTATCATGCCGAGGCTGTTGAACTTGAGGAGTCCAAAATTTTTGACGTATTGGGCTTCAAATGTTGCAAGTGCCGCAGGATCAAATCACCTGAGTGTCCTTACTCTGATTTGAAACGCAAGACACAAGAGGGCAAGAAGACAAGGGCTTCAAAGAAAGAATATTCTGGGGCAGATTCTGATTCTGGAACATTTTCTGATATGAAAGAGCGCGAGCCTGCTACTCCCGTCTTCCCTGTAGAGGATGATCCTCTGCTTTTCTCTCTTTCAACTGTTGAGCTGGTTACAGAACCTAAGTTAGAGGATACTGAATGGAGTACTCTCTCTGGGCCTGGGCCTCAAAAACTACCAGTGAGAAGACATGTTAAGCGTGAGGGGGATTGTGATACTTCTGTTGGTGGTAAACCATTGTATGCTGAATTTTCAGCACTTAATGAAGCAGGTAATATGCACAGACCTGGAGAGATGTTATCACCTTTAGAATATGACTCTCTAGTGCCCAAAGACAGCAATCTGCTTAACGATGCTGAAGGTGTACATTATGAATACATGGACTTTGAACCCCATACCTATTTCTCAGTAACGGAATTGCTCCCAGATGATAGTAGCCAGCTTGAGGGAGCTGATGCGTCTGGGGACTTTTCAGGATATTTGGAAAATCCTTGTACACTTGTCCCTGACGAATGTGGAGGTGTTAGTTTAGTTGATGAATCAGAACCTGCAATATCCTTTCAAGACAGTGTTTACTGTTGTTGGCAATGTTCACAAATGGAACCAGTCCCTGATCTCTGTTGTGAGATTTGTGGGATTTTTATTCACAGCCAATGCTCACCCTGGGTTGAATCACCATCTAGGCTTGGAAGTTGGAGGTGTGGTAACTGCCGGGAATGGCAATAA 5031 0.4329 MEPPVVRSRGRPRKRRRKEDEIEGLEAKRQALATRSIALVGRFVLKEFPRNGVFLGKVVYYECGLYRVTYEDGDFEDLDSGEVRAILLNDSDFDDDLTLRKGKLEEFLLVSQKSVKVSDESVKDESKVDAPVSSELNGEKDEEQDGEGSDGLSSDDYSGSDVEAVAAPPLPPLLQLPPSSGTVGVPEQCISLLFSVYGFLRSFSTRLFLFPFTLDEFVGCLNCRVANNLIDGIHVSLMRPLRHHLESLSSEGSDLALKCLRCHDWSLLDTLTWPVFVIQYLVVNGHTKGPEWKGFYDEVFAGEYYLLPVSRKLMILQILCDDVLDSEELKAEMNMREESEVGLDYDAEDILPAEPVPRRGRPRYAQTSCEDKGAMKLVSASNAVNQPGNSTSNSRGTGNADDGDIDRNGDECRLCGMDGTLLCCDGCPSAYHSRCIGVMKMHIPEGPWYCPECKINMTGPTVAKGMPLRGAEIFGKDFYGQLFMGTCDHLLVLNINNDEFCLKYYNQDDIPKVLQVLYGSLQHRTIYYDICMAVMQYWNIPESISPLPPPLGEDNHKPVSLVNGEYFLNNLSLMDSDNTLPSLDASTATTESHAPDSSSNASSKECPTINTKLPEETRMESVISAGSGSVSVSVSHQSDVNCQSSVNRSIVVAPTACSLLNSQYSNYGQANGMVLPMNFSLQTKESTRVGFGKFEHNTTNDFGHMGFSYKPLSYINYYMHGDFAASAAAKLAILSSEESRTEGHVSDSQRKTISANTYLQAKAFSLTASRFFWPAVEKKLVEVPRERCGWCFSCKAPVSSKRGCMLNHAVISATKSAMKVLAGFSTVRSGEGILPSIATYIMYMEECLHGLIVGPFLSASYRKQWRKRVEQATTYSAIKPLLLELEENIRVIAFSGDWVKLMDDWLVEFSMIQSAASTLGTAQKRAPSGRRNKKRSANDEVIADGCHENIEWWRGGKFTKFIFQNAVLPKSMVRKAARQGGLRKIAGIFYGDGSEIPKRTRQLVWRVAVQMSRTASQLALQVRYLDFYIRWSDLIRPEQNIQDGKGQETEASAFRNANICDKKLIEGKSCYGVAFGSQKHLSTRVMKNVIEIEQGTEGKEKYWFSDTRIPLYLVKEYEEGNGKVPSLEEHLNNAPHQLHNRQLKATRTDIFFYLACKRDKLGMFLCSVCQTGVLLRNVLQCNACQGFCHESCSISSTISANKKVEYLTTCNQCYHAKLLAQKETSNESPTSPLLLQGRENSSVTALKGPRPKSFDQAQKSARTKDSRPDIKQVSMTASKGTMPRCNDQALTTPRSKDGHPDTKQVASGSTAAKSRRKNCSWGVIWRKKNTDGTGVDFRLKNILLKGGSGFPQLEPVCHLCRKPYRSDLMYIHCETCRNWYHAEAVELEESKIFDVLGFKCCKCRRIKSPECPYSDLKRKTQEGKKTRASKKEYSGADSDSGTFSDMKEREPATPVFPVEDDPLLFSLSTVELVTEPKLEDTEWSTLSGPGPQKLPVRRHVKREGDCDTSVGGKPLYAEFSALNEAGNMHRPGEMLSPLEYDSLVPKDSNLLNDAEGVHYEYMDFEPHTYFSVTELLPDDSSQLEGADASGDFSGYLENPCTLVPDECGGVSLVDESEPAISFQDSVYCCWQCSQMEPVPDLCCEICGIFIHSQCSPWVESPSRLGSWRCGNCREWQ* 1677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2428 1676 Pfam PHD-finger 412 454 IPR019787 -
Dod03g2428 1676 MobiDBLite consensus disorder prediction 382 403 - -
Dod03g2428 1676 MobiDBLite consensus disorder prediction 1417 1434 - -
Dod03g2428 1676 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1275 1673 - -
Dod03g2428 1676 SMART testlast3 187 247 IPR018501 -
Dod03g2428 1676 CDD PHD_SF 1628 1672 - -
Dod03g2428 1676 MobiDBLite consensus disorder prediction 582 607 - -
Dod03g2428 1676 Gene3D Cupin 1352 1472 - -
Dod03g2428 1676 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 388 461 IPR013083 -
Dod03g2428 1676 ProSiteProfiles DDT domain profile. 187 247 IPR018501 -
Dod03g2428 1676 SUPERFAMILY FYVE/PHD zinc finger 1352 1409 IPR011011 -
Dod03g2428 1676 MobiDBLite consensus disorder prediction 1417 1448 - -
Dod03g2428 1676 ProSitePatterns Zinc finger PHD-type signature. 412 453 IPR019786 -
Dod03g2428 1676 MobiDBLite consensus disorder prediction 382 399 - -
Dod03g2428 1676 MobiDBLite consensus disorder prediction 1225 1313 - -
Dod03g2428 1676 Pfam DDT domain 188 243 IPR018501 -
Dod03g2428 1676 MobiDBLite consensus disorder prediction 1 21 - -
Dod03g2428 1676 CDD PHD2_CHD_II 412 453 - -
Dod03g2428 1676 MobiDBLite consensus disorder prediction 122 161 - -
Dod03g2428 1676 MobiDBLite consensus disorder prediction 122 139 - -
Dod03g2428 1676 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 302 334 IPR028942 -
Dod03g2428 1676 PANTHER PHD FINGER FAMILY PROTEIN 1 1276 - -
Dod03g2428 1676 ProSiteProfiles Zinc finger PHD-type profile. 409 456 IPR019787 -
Dod03g2428 1676 Coils Coil 15 35 - -
Dod03g2428 1676 SMART PHD_3 1356 1404 IPR001965 -
Dod03g2428 1676 SMART PHD_3 1165 1214 IPR001965 -
Dod03g2428 1676 SMART PHD_3 1628 1673 IPR001965 -
Dod03g2428 1676 SMART PHD_3 411 454 IPR001965 -
Dod03g2428 1676 PANTHER PHD FINGER FAMILY PROTEIN 1275 1673 - -
Dod03g2428 1676 MobiDBLite consensus disorder prediction 1225 1247 - -
Dod03g2428 1676 SUPERFAMILY FYVE/PHD zinc finger 401 461 IPR011011 -
Dod03g2428 1676 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1 1276 - -
Dod03g2428 1676 MobiDBLite consensus disorder prediction 1270 1293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2428 Dod-Chr3 55697097 55705154 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2428 277 544 EF-hand Containing Proteins AT5G22760 51.986 4.65e-77 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Dod03g2428 DDT 5.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2428 - - ahf:112736410 2583.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2428 03 55697097 55705154 Dod03g2428 03 55697097 55705154 ECH