Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2427 ATGGAGCAGCAGAACGGTACGGTCACTCACAACCCGGACCAACCCACCAACACTGTTTTGGAGCGCACACACTCCGAAAACTCCAACAACACTAACATGAACATCATGTTACAAGAGGCAACTAAGGCGGTGACCGTTGTCGTGGGAGCAGACTCTGGTTCGGAGTCTGTGGCAAGGTCCGAGGCCGGAGGTTTGGGGGTGGTGAAGAGGGGCAGAGGGAGGCCCCGAAAGTACAGCGCCAATGCGGAAGTACTCTTGAGCCCTACATCGGCACCGCCTCCCGGTTTCTTGACTTCCTCCTACCCTTTTGAGAGCCCCGCCGTGAAGAGGGGCAGAGGAAGGCCTCGTGGTTCTGGGAAGCTACAGATTCTGGCTTCCATCGGTGGATCTGTTGCAGAAACAGCTGGGGGAAGCTTCACACCTCATGTGATGACTGTGAATATTGGGGAGGATGTGGTCAGCAAGATGTTATCTTTTTTTCATAAAGGCCCTCGAGCTGTTTGCATTCTTTCTGCTACTGGTGCTGTGTCAAGCGTCATCATTCGCCAACCTGGTGTTTCTGGTGGTATTTTGAGATATGAGGGCCGCTTTGAGATTTTATCTTTATCTGGATCATGTACCTACACTAATGGCACTGGTGGTGCATATCGCAAAGAAGGCACGCTAAGTGTTTCACTGGCCAAACCTGATGGAAGGGTTTTTGGAGGTGGCATTGAGAGCTCATTGATTGCAGCTGGCCCTATTCAACTTGTTATGGCCACTTTCAAGCAAAACATCAGCAAGCAAATCAAGAGGAAGCACTCATCTGAATCTTCCGATGGTCCCAATGTGCCGAATAATCAAGACTCAGAAAGGGGTTGCCATAAAGTTCCTAAGTTGTTAGAAGGAGAACAGAGCTTCCCTTCACCAACAACAACATTAGCAACACTTGTGCAAAAGGCAACACCATATGGAGTGCAAGATGGTGTCACAACTGCAACAACTAATGGAGGACCAGATGATGTCATTTCTGCAGCAGCAACAACCACCAATGGCATAACCGATAATGTCATTCCTGCAACAACAACAACTAATGAGGTGTCACATAATGTCATTGCTGAAGACCTCAACATGCATTCTACCTCAGTTGATGATGGTGTTGACCTGGACCAAAGAACATCAGCACATGTTGATACCGGTGTCCCTCAGATATAA 1194 0.4874 MEQQNGTVTHNPDQPTNTVLERTHSENSNNTNMNIMLQEATKAVTVVVGADSGSESVARSEAGGLGVVKRGRGRPRKYSANAEVLLSPTSAPPPGFLTSSYPFESPAVKRGRGRPRGSGKLQILASIGGSVAETAGGSFTPHVMTVNIGEDVVSKMLSFFHKGPRAVCILSATGAVSSVIIRQPGVSGGILRYEGRFEILSLSGSCTYTNGTGGAYRKEGTLSVSLAKPDGRVFGGGIESSLIAAGPIQLVMATFKQNISKQIKRKHSSESSDGPNVPNNQDSERGCHKVPKLLEGEQSFPSPTTTLATLVQKATPYGVQDGVTTATTNGGPDDVISAAATTTNGITDNVIPATTTTNEVSHNVIAEDLNMHSTSVDDGVDLDQRTSAHVDTGVPQI* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2427 397 SUPERFAMILY AF0104/ALDC/Ptd012-like 137 262 - -
Dod03g2427 397 MobiDBLite consensus disorder prediction 262 287 - -
Dod03g2427 397 PRINTS AT-hook-like domain signature 107 118 IPR017956 GO:0003677
Dod03g2427 397 PRINTS AT-hook-like domain signature 69 79 IPR017956 GO:0003677
Dod03g2427 397 PANTHER DUF296 DOMAIN PROTEIN 34 342 - -
Dod03g2427 397 Gene3D - 141 272 - -
Dod03g2427 397 SMART AT_hook_2 109 121 IPR017956 GO:0003677
Dod03g2427 397 SMART AT_hook_2 69 81 IPR017956 GO:0003677
Dod03g2427 397 Pfam Plants and Prokaryotes Conserved (PCC) domain 141 256 IPR005175 -
Dod03g2427 397 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 34 342 IPR039605 GO:0003680
Dod03g2427 397 CDD DUF296 140 255 IPR005175 -
Dod03g2427 397 ProSiteProfiles PPC domain profile profile. 136 279 IPR005175 -
Dod03g2427 397 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2427 Dod-Chr3 55674019 55680207 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2427 66 265 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 46.445 9.32e-50 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2427 - - aip:107632385 405.986