Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2420 ATGGAGTTCTGGGGCGTTGAGGTTAAGCCAGGGAAATCTGTTAAAGTAGACCCAAGGGAGGTATTCAGAGAATACATACACATTTCTCAGGTTGCACTCGGCGAGCCGGCGAAGAAAGACAAAGGGAATGAGCATGCAGTTCTGTACATGAAAGTGGGGGAGCAGAAGCTTGTTTTGGGAACTCTTAATAGGGATGACCTCCCTCAACTATCGTTAGATTTAGTTCTCAACAAGGAGTTTGAGCTCTCCCATAGTTCGAAAAATGCCAGCGTCTATTTCTGTGGATACAAAGTTGATGATGAGAGTGAGGATGGACCTTTTGGCAGTTCTGAGGACTTCTCCGAGAGTGATGAAGATGTTGCATTGACTGGCCAAGATAATGGAAAACCTGAAACAAAAGCTGAAAAAGAAAAGGTTACTGAAGCTCAAAAAGCTACAGCTGGGTCATCAGTAAAGCTAGTTAAGATTGTTGATCCTAAGAAAGATGAAGAGGATGATTCTGATGATGAATCAGATGAGGACAATGAGTCTGATGACGAGGATGAATCCGGAAGTCCTGTTGAGATGGATGCTGATAGTGATAGTGATGAGGAGAGTGAGAGTGATGAAGATGATGAAGAGACGCCTGTCAAGAAGGTGGATCAGGGCAAGAAGAGGCCCAATGAGTCTGCATCAAAAAACCCAGTTGCTGCTAAGAAAGCAAAAAATGCTACTCCCGAAAAGACTGATGGTAAGAAAAATGCACACACAGCAACTCCTCACCCTATGAAGAAGGGTGGAAAGACTCCCAACAGCACGGCAAAAGACCAGACACCCAATTCTGGTGGACAATTGTCTTGCAAAAGCTGTAACAAGGCTTTTAACTCAGAAAGTGGTCTGCAACAGCATAAAAAAGCTAAGCATGGTGGTCAGTGA 915 0.4415 MEFWGVEVKPGKSVKVDPREVFREYIHISQVALGEPAKKDKGNEHAVLYMKVGEQKLVLGTLNRDDLPQLSLDLVLNKEFELSHSSKNASVYFCGYKVDDESEDGPFGSSEDFSESDEDVALTGQDNGKPETKAEKEKVTEAQKATAGSSVKLVKIVDPKKDEEDDSDDESDEDNESDDEDESGSPVEMDADSDSDEESESDEDDEETPVKKVDQGKKRPNESASKNPVAAKKAKNATPEKTDGKKNAHTATPHPMKKGGKTPNSTAKDQTPNSGGQLSCKSCNKAFNSESGLQQHKKAKHGGQ* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2420 304 MobiDBLite consensus disorder prediction 105 119 - -
Dod03g2420 304 SUPERFAMILY beta-beta-alpha zinc fingers 269 300 IPR036236 -
Dod03g2420 304 Gene3D Nucleoplasmin core domain 1 103 - -
Dod03g2420 304 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 300 - -
Dod03g2420 304 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 300 - -
Dod03g2420 304 MobiDBLite consensus disorder prediction 263 284 - -
Dod03g2420 304 MobiDBLite consensus disorder prediction 101 284 - -
Dod03g2420 304 SUPERFAMILY Nucleoplasmin-like core domain 3 76 IPR036824 -
Dod03g2420 304 SMART c2h2final6 278 301 IPR013087 -
Dod03g2420 304 MobiDBLite consensus disorder prediction 236 250 - -
Dod03g2420 304 MobiDBLite consensus disorder prediction 206 221 - -
Dod03g2420 304 ProSitePatterns Zinc finger C2H2 type domain signature. 280 301 IPR013087 -
Dod03g2420 304 MobiDBLite consensus disorder prediction 163 205 - -
Dod03g2420 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 278 304 IPR013087 -
Dod03g2420 304 Pfam Nucleoplasmin-like domain 3 97 IPR041232 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2420 Dod-Chr3 55559202 55562090 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2420 1 301 C2H2 Transcription Factor Family AT5G03740 39.498 2.84e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod03g2420 NPL 1.6e-13 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2420 - - gmx:547649 325.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2420 03 55559202 55562090 Dod03g2420 03 55559202 55562090 ECH
Dod10g1526 10 35954970 35958347 Dod03g2420 03 55559202 55562090 PCT