Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2409 ATGGACTTTGATATTAATGAATCTCCTCCTTACTCTTCACCATCTTCTTCTTCTCCCAGCCTAATAATCTCACCACGCAAACCAGTGACACCACCGCCCAACCCTAATCCATCACTTCCATCATCACAACCATACGATTTGATGATGAGTTCATCATCTCACAAGAGGAAAGCAGGGAGGAAAAAATTTAAGGAGACTAGGCACCCTATCTATAGGGGTGTCCGCAGAAGAAACGGCAACAAATGGGTCTGTGAAATAAGAGAACCAAACAAGAAGTCAAGGATATGGCTAGGGACATACCCTACACCTGAAATGGCTGCTAGGGCACATGATGTGGCTGTCCTAACACTTAAGGGCACCTCAGCATCCTTCAATTTCCCTGATTCACCTTTGGTTCTTCCACTTGCAAGGTCATCCTCACCTACACATATAAGAGAAGCAGCCGCGAAAGCTGCTAAGGCTTTCAAACCAAACATTTCTTCTTCTTCTTCTTCTTCATCTTCGCCTTCCTTGTTGTCAAATTCTTCTTCATCAACATCTCCTAACAATTTCTGTGGCGAGACAATAAGGCTTGACAATGGTCAAGAAAGAAGGGAATTGGGTTCTTGCTTGAAAATCAACGTGCATTATTGTGTGGAGGGTAATGAGCTTGATGTTGGGAATGATAACAATGAAGGGTCCAAAACAATGTTCTTGGATGAGGAGGCATTGTATAATATGCCAGGTTTGTTAGATAGTATGGCAGAGGGTTTGCTCATTACCCCGCCTTCTATGAAGAGAGCATTGGATTGGGATGACATTGGTTGTGAATTAATAGACCTGAATCTGTGGGCAGACTAA 840 0.4321 MDFDINESPPYSSPSSSSPSLIISPRKPVTPPPNPNPSLPSSQPYDLMMSSSSHKRKAGRKKFKETRHPIYRGVRRRNGNKWVCEIREPNKKSRIWLGTYPTPEMAARAHDVAVLTLKGTSASFNFPDSPLVLPLARSSSPTHIREAAAKAAKAFKPNISSSSSSSSSPSLLSNSSSSTSPNNFCGETIRLDNGQERRELGSCLKINVHYCVEGNELDVGNDNNEGSKTMFLDEEALYNMPGLLDSMAEGLLITPPSMKRALDWDDIGCELIDLNLWAD* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2409 279 CDD AP2 69 129 IPR001471 GO:0003700|GO:0006355
Dod03g2409 279 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 278 IPR045277 GO:0003700
Dod03g2409 279 MobiDBLite consensus disorder prediction 156 184 - -
Dod03g2409 279 MobiDBLite consensus disorder prediction 54 69 - -
Dod03g2409 279 MobiDBLite consensus disorder prediction 8 24 - -
Dod03g2409 279 MobiDBLite consensus disorder prediction 1 69 - -
Dod03g2409 279 Pfam AP2 domain 69 119 IPR001471 GO:0003700|GO:0006355
Dod03g2409 279 MobiDBLite consensus disorder prediction 25 40 - -
Dod03g2409 279 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Dod03g2409 279 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700|GO:0006355
Dod03g2409 279 Gene3D AP2/ERF domain 70 128 IPR036955 GO:0003700|GO:0006355
Dod03g2409 279 MobiDBLite consensus disorder prediction 155 184 - -
Dod03g2409 279 ProSiteProfiles AP2/ERF domain profile. 70 127 IPR001471 GO:0003700|GO:0006355
Dod03g2409 279 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 278 - -
Dod03g2409 279 SUPERFAMILY DNA-binding domain 70 129 IPR016177 GO:0003677
Dod03g2409 279 SMART rav1_2 70 133 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2409 Dod-Chr3 55329163 55331063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2409 10 278 AP2-EREBP Transcription Factor Family AT5G51990 38.889 9.97e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod03g2409 AP2 3.7e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1512 10 35734658 35735672 Dod03g2409 03 55329163 55331063 PCT