Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2402 ATGAAGAAACCCACAAAGTCTACAGTTGCGTCGATCTTTACTTTGTTACACAGGATGGGTCTTCATTCAAGACTAAATACAGATTTTCGCCCTTATTTCTATGCAGCTACAAAGGATAAAATGGAGATGGATGTTGAAGCATACCTGAGGCGCCGTTATGAAACTCAGATTGCAGATATTGAAATTATAGAGAAAGAAGACCTGGATCTTAAAAATCATTTGTCTGGCTTAAGAAAATCATATTTAAAGCTATCATTTGATACCGTGCAACAATTGATGAATGTGAAGAGCGACTTGATGCATGTTGTTGAAAGGAATCAGGCAAAATCTGATGCTGCAGAAGCCTATGAGTCCATATTGACTGGAAGAAGAGAACAAAAACCTCAAGACTTCATAGATTGCATAATTGATCTTCGTGAATATGATGTTCCTTATCACGTTCGCTTTGCCATTGACAATGATATACGGTGTGGCCAGTGGTATGATGTTGCCGTGTCCAACACTGGGGTCACACTTGAGAATAGGACAGATCTTCTGCAGCGTGCTGAAGTTCGTATTTGTGCATTTGACATTGAGACCACTAAACTTCCACTAAAATTTCCTGATGCTGACTATGATTTAATTATGATGATTTCATACATGATAGATGGACAAGGTTATTTAATCATAAATAGAGAGTGTGTCGGGGATGACATTGAGGATTTAGAGTACACTCCAAAACCGGAGTTTGAAGGTTGTTTTAAAGTCACGAATGTTAAAAACGAGGTTGAGCTTCTCAGATTATGGTTTTCTCATATGCAAGAAGTGAAACCTGGTATCTATGTGACGTATAATGGTGATTTTTTTGATTGGCCATTCCTAGAACAAAGGGCAGCCCATCATGGGTTCAAAATGAGTGATGAATTGGGGTTTCAGTGCGACAAGAATCAAGGGGAATGTCGTGCTAGATTTGCTTGCCATTTAGATTGTTTTGCTTGGGTTAAACGCGATAGTTATCTCCCTCAGGGGAGCCAAGGCCTAAAGGCTGTTACAAAAGCAAAGTTGGGTTATGATCCGTTGGAGGTGAATCCTGAGGACATGGTTCGGTTTGCAAAGGAAAAGCCTCAGATGATGGCTTCGTATTCTGTTTCTGATGCAGTGGCAACTTATTACTTATATACAACTTATGTCCATCCATTTATTTTCTCTCTTGCAACTATTATACCCATGTCACCAGATGAGGTTTTGCGCAAAGGTAGTGGGACTCTCTGTGAAATGTTGCTCATGGTCCAGGCATACAAAGCTAATGTCATCTGCCCTAACAAACACCAATCTGATCCAGAGAAGTTTTATAACAATCATCTTCTTGAGAGTGAGACGTACATAGGTGGCCATGTAGAATGCCTGGAAAGTGGTGTTTTTAGATCTGATATTCCAACTAGTTTTACACTCGAGCCATCTGCCTTTGAGCTATTGATCAACAACCTTGATCGAGATCTACAGTATGCTATAAGAGTAGAGGGTAAGATGGATTTGGAATCTGTCTCTAATTACGATGAAGTGAAGAATACTATTATGGAAAAGCTTGAAAAATTACGAGATGTTCCAGTACGAGAAGAATGTCCCCTCATTTATCATCTGGATGTAGCTGCCATGTATCCAAACATAATTTTAACAAATCGGCTTCAGCCACCGTCAATTGTTACCGATGAGGTTTGCACTGCATGTGATTTCAACCGTCCTGGGAAGGCTTGTCTACGCACACTTGAGTGGGTTTGGCGAGGAGAAACATTCATGGCAAAGAAAAGTGATTATTATCATATTAAGAAGCAGATTGAGTCAGAATTTGTTGATGGTGCTAATGAGAGGCCATCAAAATCTTTTCTTGACCTGCCCAAGTTAGAGCAACAATCGAGGCTGAAAGACCGTTTGAAGAAATACTGCCAGAAGGCATATAAGCGGGTGCTTGACAAACCAGTTACTGAAGTTCGTGAAGCAGGAATCTGCATGCGTGAAAATCCATTTTATGTTGACACTGTTCGAAGTTTCCGGGATAGAAGATATGAATATAAAGGCCTTAATAAGGTTTGGAAGGGAAAACTATCAGAAGCCAAAGCCAGTGGAAATTCTATGAGGATCCAGGAAGCACAAGACATGGTTGTGCTTTATGATTCATTACAACTTGCTCACAAGTGTATACTTAATTCCTTTTACGGATATGTCATGCGCAAGGGTGCTAGATGGTACTCCATGGAAATGGCTGGAGTAGTCACATATACTGGTGCAAAAATAATTCAGAATGCCCGCTTGCTGGTAGAGAAAATAGGAAAACCACTTGAATTGGACACTGATGGTATCTGGTGTGCACTTCCTGGATCTTTTCCAGAAAATTTCACTTTTAAAACAAAAGACTCAAAGAGGAAGTTGACAATCTCATACCCTTGTGTTATGCTTAATGTTGATGTGGCAATAAATAATACAAATGATCAGTACCAGACACTCACAGATCCAATTAGAAAAACTTATACAACTCGGAGTGAATGCTCTATTGAATTTGAGGTGGATGGACCATACAAGGCAATGATTCTTCCTGCTTCCAAGGAGGAAGGAATTCTAATTAAAAAGCGATATGCTGTTTTTAATGATGATGGAACCCTTGCAGAGTTGAAAGGTTTTGAGATCAAGAGAAGAGGGGAACTGAAGCTAATCAAAGTTTTCCAGGCTGAGCTTTTCGACAAGTTTCTTCATGGTTCAACTTTAGATGAATGCTATTCAGCTGTTGCTGCTGTGGCAAATCGCTGGCTTGATCTTCTTGATAACCAAGGAAAGGATATTGCAGATAGTGAGTTGCTTGACTACATATCAGAATCAAGTACCATGAGCAAGTCTTTAGCTGATTATGGTGAGCAGAAGTCTTGTGCTGTCACCACTGCTAAACGTCTTGCTGACTTTCTTGGTGATACAATGGTCAAAGATAAAGGTCTTCGATGCCAGTACATAGTAGCAAGTGAACCTAAGGGAACGCCCGTAAGCGAGCGTGCTATTCCTGTTGCAATATTTGAAACTGATGCTGAAGTAATGAAGTTCTATGTTCGAAAATGGTGCAAGGTCTCATCAGATGTTGGCATTCGATCCATAGTTGACTGGTCCTATTACAAGCAGCGGCTTTGTTCTGCAATTCAAAAAATAGTCACTATTCCTGCTGCAATGCAAAAGGTTGCGAATCCCATCCCTAGGGTAGCTCATCCTGATTGGTTGCATAAGAAGGTTCGCGAGAAGGAGGACAAGTTTCGGCAACGAAAATTAGTTGATGTCTTTAACTCAATGAACAAGGATGAGCGCTCAAAAAAGCGTAGTAACTCTAATGGTGTCGGCCTTGTGATGGATAAAGAGGTGATTGACTTGGAGGACTTTGGAAACAAGGCCAGGAGTTCTACATTTGGTCCTAGACCTATTATACGGCATTATGAAGCTAATAATGAAAGGCATTCAGTGAAGCTTAATGGTCAAGAAAATTCTGAACAACAACATAATGATAATAGCTGCAAGGATCAGACACTTTCATCTTTTCAATCAAATGAAACATCATGTGAAAATGTTGATAGAAATGTTGATTATCAAGGATGGCTTCAAATAAAGAAGAGAAAGTGGAAAGATCTCCTGGAAAGGAGAAAAAAGCGAAGATTGGAGAATTCAAAGAAATCTGATCCTGTAAATGGCATTTTTAAACAAATGAATGGTACGATGAATCAGGGCAGAAATAATGTCAGTTCATATTTCCGAAGGCATGAGGTAGCCCTGATGCGGTGCCACTGGCAGATAATACAGCTAATTCACAGTTCAGAGGTTGGCCAATTTTTGGCATGGGTTGTTGTAGATGGGATTATGCTTAAGATTCCTGTTTCTGTTCCTAGAGTCTTTTACCTTAACTCTAGATCAGTTACTGAAGAATTTCTTGGCAAACGTGTCAACAAGACTCTTCCTCATGGAAGGCGTAGTTATAATCTGTATGAGGTTTCAATTGATGAAGTTCAATTTAGGGAAGCAAGCCAAAAACTTGCAGCTCTCCTTGCAGATCCTGATGTTGAGGGAATATATGAAACAAAGGTGCCACTGGAATTTAATGCTATAGTCCAGCTTGGTTGTGTATGTAAGGTGGACAAAACTGCCAAACAGCACAGTCTACAAGACTCATGGAATTTGAGTGAGTTGCACATGAAGACCACAACAGAATGTCCTTATCTTGAACAATCCATATCCTTCTTTTACTTATATCATAGCATCTGTGAGGGACGGGCTATATATGTTGGATATTTTCCTGCATCAAAAGCAATTAATGTTGTGGTAGTTAATCCATATCAAAACAAGGATGTATCACCAACTTTTCTTGAAAGACAGTTTCATGATGCATGCCAAACTTTGTCTATTGAGCCACCTCCACGGAATAGCATTAGTTTTAAGGTGGACTATGTTTCACATGTCAAGGATGCTGAAACAGTGATGCAGAGAGCAATAAATGATCACAGGAATGAATATCACGGGCCTATGGTTGCTGTCATTGAATGCCCAAATGTTCAACCGGTAAAATTGGGTATTCGAGTTCTAGATGATTTTCCATGCCTGAGTATTCCTTCTAATGCCCGTGATAGTCAGTACCAGATTCTTGGATGGCAACAAGTTGCTGCAAAAATTGGAATGCAACGTTGTGCTGCATCAGCCCAGTGGCTAAACGAGAGGATTGCTCTCTCAAGATATGCCCATGTACCACTGGGGAATTTTGAACTTGACTGGCTTATATTGACAGCGGATACCTTCTTTTCAAGAGCATTGCATGATAGTCAACAGGTACTTTGGATATCTGAAGACGGTCTTCCAGATTTAGGTGGCATTAATGATGAAGAGACCTATTTTCTTGACGAGGTCCACCAACCCGTCCTTACATATCCCAGAGCTTACAGAAAAGTTACTGTGGAGCTAAAGATACACCACCTGGCTGTGGATGCTCTTCTAAAATGTAACCAGGTTAATGAAATGGAAGGAGGTGCTTTGTTAGGATTTGATCATGAATTCAATTCTGGAGCAATTTCCATGAATGATCAGAATGGCTTTGATGAGGCCACGTCCTGTGCACCTGCCTTTCGAGTCCTAAAACAGTTGATTCAGCGGTGCCTTACAGACGCAGTTACGTCTGGAAATGTATATGCAGATGCAATATTACAACATCTATATCGATGGATTTGCAGCCCTCAATCAAAACTTCATGATCCAGCTCTTCACCAGCTACTCCACAAGGTCATGCAAAAGGTCTTCGCATTGTTGTTGGCAGAATTCCGCAAGTTGGGTGCAACAATTGTATTTGCTAACTACTCAAAGATTATTATAGACACAGGCAAATATGATCTGGCTGCAGCCAAAGCTTACAGTGATAGTTTGTTAAGAACTATCCAATCTAGAGACTTATTTGAATGGATCGAGCTTGAACCACTGCAGTTCTGGCAGTCATTGCTATTTATGGATCAGTATAACTATGGTGGAATACCAGCAAAGTCTGATGAAGCCAAAAATGATGAATCTCAAGTTGACATTATATCGAGCTGGAATATTGCTGAATACTTGCCAAAGAAAATCCAGGCAAGGCGTCAATACAGAATGGCGACTCCTGCACCCCATTCGATTAACATTGGAGCTGCAGAGGCTTTTGACTCAGAAATGACAGAATATATTAAAGGACAGATCAGCTGTTACTTCACAGACAAACTTCTCGGAATTGTTCGTGATATGAAAGGCATGAGCAGATCAGAAAATGACCCCAACACATCGTCTGGCCTTCCTCAACTTGTGGGCGATCTCCACAGAGGAGATGCAGCCTTGGAATTTATCAAGCACGTCTCTGCCGTTCTTGCCCTCGACCAAAGTGTGCAGCATGATGTTTTGGTCATGAGAAAGAATCTGTTAAAATATGTTCATGTCAGGGAGTTTGCTCCAGAAGCTGAGTTCCGTGATCCTTGTCATTCCTTCATCTTATCCAATGTCATCTGCAGCTATTGTAATGACTGCAGAGACCTGGACTTGTGCCGCGACTCAGCTTTATTGACCCAGGAGTGGCGCTGTGCGGTGCCACAGTGTGGTCAGCCTTATGACCGAGAGGTGATGGAGAATGCTCTCCTTCAGATTGTACGACAGAGAGAACGGCTATACCATCTGCAAGATCTGGTGTGTCTCAGGTGCAACCAGGTTAAAGCTGCTCATTTGGCTGAGCAATGTGCATGTGCCGGCTCTTATAGGTGCAAGGAAGATGCAACTGAATTTCGGGCAAAGATGCAGGTTTTCTTGAACATAGCTTCTCATCAGAAATTCCAACTTCTCCAGGAATGCACCTCCTGGATTTTAGAACTTAGATAG 6381 0.4103 MKKPTKSTVASIFTLLHRMGLHSRLNTDFRPYFYAATKDKMEMDVEAYLRRRYETQIADIEIIEKEDLDLKNHLSGLRKSYLKLSFDTVQQLMNVKSDLMHVVERNQAKSDAAEAYESILTGRREQKPQDFIDCIIDLREYDVPYHVRFAIDNDIRCGQWYDVAVSNTGVTLENRTDLLQRAEVRICAFDIETTKLPLKFPDADYDLIMMISYMIDGQGYLIINRECVGDDIEDLEYTPKPEFEGCFKVTNVKNEVELLRLWFSHMQEVKPGIYVTYNGDFFDWPFLEQRAAHHGFKMSDELGFQCDKNQGECRARFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYNNHLLESETYIGGHVECLESGVFRSDIPTSFTLEPSAFELLINNLDRDLQYAIRVEGKMDLESVSNYDEVKNTIMEKLEKLRDVPVREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDFNRPGKACLRTLEWVWRGETFMAKKSDYYHIKKQIESEFVDGANERPSKSFLDLPKLEQQSRLKDRLKKYCQKAYKRVLDKPVTEVREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSMRIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTKDSKRKLTISYPCVMLNVDVAINNTNDQYQTLTDPIRKTYTTRSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLDECYSAVAAVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTAKRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAIPVAIFETDAEVMKFYVRKWCKVSSDVGIRSIVDWSYYKQRLCSAIQKIVTIPAAMQKVANPIPRVAHPDWLHKKVREKEDKFRQRKLVDVFNSMNKDERSKKRSNSNGVGLVMDKEVIDLEDFGNKARSSTFGPRPIIRHYEANNERHSVKLNGQENSEQQHNDNSCKDQTLSSFQSNETSCENVDRNVDYQGWLQIKKRKWKDLLERRKKRRLENSKKSDPVNGIFKQMNGTMNQGRNNVSSYFRRHEVALMRCHWQIIQLIHSSEVGQFLAWVVVDGIMLKIPVSVPRVFYLNSRSVTEEFLGKRVNKTLPHGRRSYNLYEVSIDEVQFREASQKLAALLADPDVEGIYETKVPLEFNAIVQLGCVCKVDKTAKQHSLQDSWNLSELHMKTTTECPYLEQSISFFYLYHSICEGRAIYVGYFPASKAINVVVVNPYQNKDVSPTFLERQFHDACQTLSIEPPPRNSISFKVDYVSHVKDAETVMQRAINDHRNEYHGPMVAVIECPNVQPVKLGIRVLDDFPCLSIPSNARDSQYQILGWQQVAAKIGMQRCAASAQWLNERIALSRYAHVPLGNFELDWLILTADTFFSRALHDSQQVLWISEDGLPDLGGINDEETYFLDEVHQPVLTYPRAYRKVTVELKIHHLAVDALLKCNQVNEMEGGALLGFDHEFNSGAISMNDQNGFDEATSCAPAFRVLKQLIQRCLTDAVTSGNVYADAILQHLYRWICSPQSKLHDPALHQLLHKVMQKVFALLLAEFRKLGATIVFANYSKIIIDTGKYDLAAAKAYSDSLLRTIQSRDLFEWIELEPLQFWQSLLFMDQYNYGGIPAKSDEAKNDESQVDIISSWNIAEYLPKKIQARRQYRMATPAPHSINIGAAEAFDSEMTEYIKGQISCYFTDKLLGIVRDMKGMSRSENDPNTSSGLPQLVGDLHRGDAALEFIKHVSAVLALDQSVQHDVLVMRKNLLKYVHVREFAPEAEFRDPCHSFILSNVICSYCNDCRDLDLCRDSALLTQEWRCAVPQCGQPYDREVMENALLQIVRQRERLYHLQDLVCLRCNQVKAAHLAEQCACAGSYRCKEDATEFRAKMQVFLNIASHQKFQLLQECTSWILELR* 2127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2402 2126 SUPERFAMILY Ribonuclease H-like 26 410 IPR012337 -
Dod03g2402 2126 Pfam DNA polymerase family B 699 1008 IPR006134 GO:0000166|GO:0003677
Dod03g2402 2126 SMART polmehr3 182 785 IPR006172 GO:0000166|GO:0003676|GO:0003887
Dod03g2402 2126 Pfam DNA polymerase family B, exonuclease domain 27 343 IPR006133 -
Dod03g2402 2126 Gene3D DNA Polymerase, chain B, domain 1 22 174 - -
Dod03g2402 2126 Coils Coil 2122 2126 - -
Dod03g2402 2126 Gene3D Palm domain of DNA polymerase 696 880 IPR023211 -
Dod03g2402 2126 MobiDBLite consensus disorder prediction 1221 1240 - -
Dod03g2402 2126 Pfam Domain of unknown function (DUF1744) 1472 1839 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Dod03g2402 2126 Gene3D - 181 411 IPR036397 GO:0003676
Dod03g2402 2126 CDD DNA_polB_epsilon_exo 183 386 - -
Dod03g2402 2126 Gene3D - 884 1068 IPR042087 -
Dod03g2402 2126 CDD POLBc_epsilon 446 1065 - -
Dod03g2402 2126 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 24 2123 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Dod03g2402 2126 SMART DUF1744_2 1455 1839 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Dod03g2402 2126 SUPERFAMILY DNA/RNA polymerases 429 1058 IPR043502 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2402 29 2123 Core DNA Replication Machinery Family AT2G27120 68.631 0.0 2960
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2402 K02324 - gmx:100812003 3617.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2402 03 55273254 55295092 Dod03g2402 03 55273254 55295092 ECH