Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2376 ATGAGAGATTTCAATATAGAGGACATGAACAATTTATACTACCATCATGCCCCAACTTTCATTGAGTGGCTCAAACCATCTTCTTCCCCTCCATATCTTAATCTTACTCCAGCATCAATATCATCACCAAATCCTTCTTCTTCTGTGACTCATAATGAGATAATACAAGAGACTATCCAATTTTTGCCTATTTTAGGTGCAAAGCCCTCAAAAGAGGAGGAAAATGGAGTGCAAATGGAGGGTTTTGAGGTGAAAGAAGAGAAGGTGGAGCAAGTGACTGTGGCTTTGCACATTGGATTGCCTAACACTACTGAAGGAGCACATCATCATCATGATGGTGATGATGATGAGAAGAAGTTTTTCCATGTGAAGGAAGAGGAAGAAAAGCCCTTGAAGAAAACCACCCTACATGGCTGCTCTTTCAATCAGGAGAGAAGGTTTTGGATACCAACACCTGCTCAGATCCTTGTTGGGCCTATGCAGTTTGCTTGTTCCATATGCAGCAAGACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGGCATGGGTCCGAATTTAGGAAAGGGCCAGACTCACTAAGAGGAACACAACCAGCAGCAATGCTTAGGCTACCATGCTACTGTTGTGCTCAGGGTTGCAAGAACAACATCAACCATCCAAGAGCAAAGCCCTTGAAGGACTTCAGAACACTCCAAACCCACTACAAGAGAAAGCATGGTGCAAAGCCCTTTATGTGCAGGAAATGTGGGAAGACTTTTGCAGTGAAAGGAGATTGGAGGACTCATGAGAAGAACTGTGGCAAGTTGTGGTATTGCACTTGTGGTTCAGATTTTAAGCACAAAAGGTCTCTCAAAGATCACATTAGATCCTTTGGAAAGGGTCATAACCCACACCCTCCCCTTGAAGAAGATGAGAAGGAATGCATTACTGGGTCTGATGAAGATGATCAGGTTATTGCTCACACATGA 975 0.4328 MRDFNIEDMNNLYYHHAPTFIEWLKPSSSPPYLNLTPASISSPNPSSSVTHNEIIQETIQFLPILGAKPSKEEENGVQMEGFEVKEEKVEQVTVALHIGLPNTTEGAHHHHDGDDDEKKFFHVKEEEEKPLKKTTLHGCSFNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHNPHPPLEEDEKECITGSDEDDQVIAHT* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2376 324 MobiDBLite consensus disorder prediction 292 311 - -
Dod03g2376 324 SUPERFAMILY beta-beta-alpha zinc fingers 232 266 IPR036236 -
Dod03g2376 324 ProSiteProfiles Zinc finger C2H2 type domain profile. 162 189 IPR013087 -
Dod03g2376 324 Gene3D Classic Zinc Finger 161 184 - -
Dod03g2376 324 SMART c2h2final6 209 241 IPR013087 -
Dod03g2376 324 SMART c2h2final6 162 184 IPR013087 -
Dod03g2376 324 SMART c2h2final6 246 266 IPR013087 -
Dod03g2376 324 Pfam Zinc finger, C2H2 type 162 181 IPR013087 -
Dod03g2376 324 SUPERFAMILY beta-beta-alpha zinc fingers 153 185 IPR036236 -
Dod03g2376 324 Gene3D Classic Zinc Finger 242 305 - -
Dod03g2376 324 ProSitePatterns Zinc finger C2H2 type domain signature. 164 184 IPR013087 -
Dod03g2376 324 ProSiteProfiles Zinc finger C2H2 type domain profile. 246 266 IPR013087 -
Dod03g2376 324 PANTHER ZINC FINGER PROTEIN WIP2 10 319 IPR043584 GO:0003700|GO:0010468
Dod03g2376 324 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 10 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2376 Dod-Chr3 54754084 54758279 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2376 17 312 C2H2 Transcription Factor Family AT1G08290 57.101 7.06e-120 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod03g2376 zf-C2H2_6 0.00014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2376 - - gmx:100802773 510.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1491 10 35353381 35357077 Dod03g2376 03 54754084 54758279 PCT