Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2360 ATGTGTATACTTCTTCCCAGGAATTCTTCTGGCCTCTGTGCCTTCTTCACAGTTGCCTCACAAAGCGGTGTTCACTTAGTTTCGAAGGTTGATTTTGATGATGCAAATGATCCTGAAGAAACAATGGAAGAAGAAATTGAATACGAAGAAGTAGAAGAAGAAGAGGAAGTGGAAGAAATAGAAGAGGAGGCGGAGGTAGAAGATAAGGAGGAGAAGAAAAAGCATGATGAACTTCTTTCTCGTCCTCCTCATGGGTCTGAAGTATACATTGGTGGTGTTCCGCTTGATGGAAGAAAAATAAAATGTTCAACAGCTCAAGCGAAACACCGTCTTTTATTGGCAACCGTTCCTAGAAGCTGGGGTGATGAAGATCTTAGGAAGGTTGTAACTGATATTGGACCTGGAGTTACTGGTTTAGAACTAGTCAAGGATATGAAGAACACAAAAAATAACCGTGGATTTGCTTTTATTGACTATTATAATCATGCATGTGCTGAATATTCAAGGCAAAAGATGATGAGCCCAACATTTAAGCTAGGTGACAATGCTCCAACAGTTAGCTGGGCTGACCCTAAAAATGCCGATTCCTCTGCTGCATCTCAGGTGAAGGCAGTATATGTGAAGAACTTGCCTAAGAATGTCACTCAGGAACAGTTGAAGAAGCTTTTTGAACACCATGGAAAGATCACAAAGGTGGTTCTTCCACCAGCAAAGTCTGGACAAGAAAAGAACAGAATTGGTTTTGTACATTTTGCAGAGAGGTCAAGTGCTATGAAAGCTCTAAAAAACACTGAAAGATATGAATTAGAAGGTCAGATTTTGGAATGCTCTCTAGCAAAGCCACAGGCTGATCAGAAGTCTGGAGGCTCAAATATGCCGAAGCCGGGATTGCTTCCAACTTATCCACCTCATGTTAGTTATGGTTTGGTTGGGGGTTCCTATGGTGCCCTTGGCGCAGGATATGGTGCTCCAGGTCTTGCTCAGCCCTTGATGTATGGAAGGGGTGCAGCTCCCCCTGGAATGGCCATGATGCCTATGCTTCTGGCTGATGGGCGGATCGGATATGTCTTGCAACAACCAGGTCCAGGTATCCCGCCACAAACGCTGCCCTTCCATCAGAGAGGTGGCCGGGGTGGCGGCGGCGGCGGCAGTGGTGCGAGTGGCAGCAGGAATGCTGGCAGTTCCAGTAAGGGGAGGCACAACAACGATAGTGGCCAAGGGCGCAGATACCGCCCATATTAG 1242 0.4605 MCILLPRNSSGLCAFFTVASQSGVHLVSKVDFDDANDPEETMEEEIEYEEVEEEEEVEEIEEEAEVEDKEEKKKHDELLSRPPHGSEVYIGGVPLDGRKIKCSTAQAKHRLLLATVPRSWGDEDLRKVVTDIGPGVTGLELVKDMKNTKNNRGFAFIDYYNHACAEYSRQKMMSPTFKLGDNAPTVSWADPKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPAKSGQEKNRIGFVHFAERSSAMKALKNTERYELEGQILECSLAKPQADQKSGGSNMPKPGLLPTYPPHVSYGLVGGSYGALGAGYGAPGLAQPLMYGRGAAPPGMAMMPMLLADGRIGYVLQQPGPGIPPQTLPFHQRGGRGGGGGGSGASGSRNAGSSSKGRHNNDSGQGRRYRPY* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2360 413 MobiDBLite consensus disorder prediction 387 401 - -
Dod03g2360 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 281 IPR000504 GO:0003723
Dod03g2360 413 Gene3D - 109 190 IPR012677 -
Dod03g2360 413 SUPERFAMILY RNA-binding domain, RBD 110 193 IPR035979 GO:0003676
Dod03g2360 413 PANTHER RNA RECOGNITION MOTIF 63 97 - -
Dod03g2360 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 172 IPR000504 GO:0003723
Dod03g2360 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 272 IPR000504 GO:0003723
Dod03g2360 413 PANTHER RNA RECOGNITION MOTIF 96 382 - -
Dod03g2360 413 MobiDBLite consensus disorder prediction 32 83 - -
Dod03g2360 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 191 IPR000504 GO:0003723
Dod03g2360 413 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 96 382 - -
Dod03g2360 413 Coils Coil 41 77 - -
Dod03g2360 413 PANTHER RNA RECOGNITION MOTIF 28 68 - -
Dod03g2360 413 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 28 68 - -
Dod03g2360 413 MobiDBLite consensus disorder prediction 358 413 - -
Dod03g2360 413 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 63 97 - -
Dod03g2360 413 SUPERFAMILY RNA-binding domain, RBD 199 295 IPR035979 GO:0003676
Dod03g2360 413 MobiDBLite consensus disorder prediction 67 82 - -
Dod03g2360 413 MobiDBLite consensus disorder prediction 36 66 - -
Dod03g2360 413 SMART rrm1_1 204 277 IPR000504 GO:0003723
Dod03g2360 413 SMART rrm1_1 110 187 IPR000504 GO:0003723
Dod03g2360 413 Gene3D - 192 297 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2360 Dod-Chr3 54534535 54540572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2360 205 382 Eukaryotic Initiation Factors Gene Family AT2G23350 28.169 1.17e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2360 K13161 - gmx:100806658 489.189