Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2354 ATGCCACGAGGAAAGGCAAATTCTTCATCAGTTGCCAATCCATCTAAGCCTGAAAATCCAGTTGAACCTGATGAGAAGGTTGATTTTGATGATGCAAATGATCCTGAAGAAACAATGGAAGAAGAAATTGAATACGAAGAAGTAGAAGAAGAAGAGGAAGTGGAAGAAATAGAAGAGGAGGTAGAAGAGGTGGAAGACGAGGAGGAGGACCCAGAGGAGGACCTGGAGGACCAAGAGGAGGTAGAGGATGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGTTGAAGAAGTGGAAGAAGATGATACCATGCAAAACTGTAGCGAGGTAGAAGATAAGGAGGAGAAGAAAAAGCATGATGAACTTCTTTCTCTTCCTCCTCATGGGTCTGAAGTATACATTGGTGGTGTTCCGCTTGATGTCTCGACTGAGGATTTGAAATCCTTTTGTGAGTCCATTGGGGAAGTTACAGAGGTTCGAGTAATGAAAGGAAAAGATTCTTCCGAGAATAAGGGCTTTGGTTTTGTGACTTTTAGAAGTAAGGAATTGGCTTCTAAAGCCATTGAGGAGCTGAATAATAAAGAATTTAAGGGAAGAAAAATAAAATGTTCAACAGCTCAAGCGAAACACCGTCTTTTTATTGGCAACGTTCCTAGAAGCTGGGGTGATGAAGATCTTAGGAAGGTTGTAACTGATATTGGACCTGGAGTTACTGGTTTAGAACTAGTCAAGGATATGAAGAACACAAAAAATAACCGTGGATTTGCTTTTATTGACTATTATAATCATGCATGTGCTGAATATTCAAGGCAAAAGATGATGAGCCCAACATTTAAGCTAGGTGACAATGCTCCAACAGTTAGCTGGGCTGACCCTAAAAATGCCGATTCCTCTGCTGCATCTCAGGTGAAGGCAGTATATGTGAAGAACTTGCCTAAGAATGTCACTCAGGAACAGTTGAAGAAGCTTTTTGAACACCATGGAAAGATCACAAAGGTGGTTCTTCCACCAGCAAAGTCTGGACAAGAAAAGAACAGAATTGGTTTTGTACATTTTGCAGAGAGGTCAAGTGCTATGAAAGCTCTAAAAAACACTGAAAGATATGAATTAGAAGGTCAGATTTTGGAATGCTCTCTAGCAAAGCCACAGGCTGATCAGAAGTCTGGAGGCTCAAATATGCCGAAGCCGGGATTGCTTCCAACTTATCCACCTCATGTTAGTTATGGTTTGGTTGGGGGTTCCTATGGTGCCCTTGGCGCAGGATATGGTGCTCCAGGTCTTGCTCAGCCCTTGATGTATGGAAGGGGTGCAGCTCCCCCTGGAATGGCCATGATGCCTATGCTTCTGGCTGATGGGCGGATCGGATATGTCTTGCAACAACCAGGTCCAGGTATCCCGCCACAAACGCTGCCCTTCCATCAGAGAGGTGGCCGGGGTGGCGGCGGCGGCGGCAGTGGTGCGAGTGGCAGCAGGAATGCTGGCAGTTCCAGTAAGGGGAGGCACAACAACGATAGTGGCCAAGGGCGCAGATACCGCCCATATTAG 1542 0.4553 MPRGKANSSSVANPSKPENPVEPDEKVDFDDANDPEETMEEEIEYEEVEEEEEVEEIEEEVEEVEDEEEDPEEDLEDQEEVEDEEEEEEEEEEVEEVEEDDTMQNCSEVEDKEEKKKHDELLSLPPHGSEVYIGGVPLDVSTEDLKSFCESIGEVTEVRVMKGKDSSENKGFGFVTFRSKELASKAIEELNNKEFKGRKIKCSTAQAKHRLFIGNVPRSWGDEDLRKVVTDIGPGVTGLELVKDMKNTKNNRGFAFIDYYNHACAEYSRQKMMSPTFKLGDNAPTVSWADPKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPAKSGQEKNRIGFVHFAERSSAMKALKNTERYELEGQILECSLAKPQADQKSGGSNMPKPGLLPTYPPHVSYGLVGGSYGALGAGYGAPGLAQPLMYGRGAAPPGMAMMPMLLADGRIGYVLQQPGPGIPPQTLPFHQRGGRGGGGGGSGASGSRNAGSSSKGRHNNDSGQGRRYRPY* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2354 513 MobiDBLite consensus disorder prediction 487 501 - -
Dod03g2354 513 SMART rrm2_1 130 203 IPR003954 GO:0003676
Dod03g2354 513 SMART rrm2_1 304 377 IPR003954 GO:0003676
Dod03g2354 513 SUPERFAMILY RNA-binding domain, RBD 297 395 IPR035979 GO:0003676
Dod03g2354 513 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 207 IPR000504 GO:0003723
Dod03g2354 513 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 291 IPR000504 GO:0003723
Dod03g2354 513 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 482 - -
Dod03g2354 513 MobiDBLite consensus disorder prediction 108 124 - -
Dod03g2354 513 MobiDBLite consensus disorder prediction 1 16 - -
Dod03g2354 513 PANTHER RNA RECOGNITION MOTIF 1 482 - -
Dod03g2354 513 Coils Coil 38 101 - -
Dod03g2354 513 MobiDBLite consensus disorder prediction 24 107 - -
Dod03g2354 513 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 201 IPR000504 GO:0003723
Dod03g2354 513 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 372 IPR000504 GO:0003723
Dod03g2354 513 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 272 IPR000504 GO:0003723
Dod03g2354 513 Gene3D - 210 290 IPR012677 -
Dod03g2354 513 SUPERFAMILY RNA-binding domain, RBD 126 295 IPR035979 GO:0003676
Dod03g2354 513 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 381 IPR000504 GO:0003723
Dod03g2354 513 Gene3D - 20 209 IPR012677 -
Dod03g2354 513 MobiDBLite consensus disorder prediction 1 128 - -
Dod03g2354 513 Gene3D - 291 397 IPR012677 -
Dod03g2354 513 MobiDBLite consensus disorder prediction 458 513 - -
Dod03g2354 513 SMART rrm1_1 130 203 IPR000504 GO:0003723
Dod03g2354 513 SMART rrm1_1 304 377 IPR000504 GO:0003723
Dod03g2354 513 SMART rrm1_1 210 287 IPR000504 GO:0003723
Dod03g2354 513 CDD RRM_SF 131 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2354 Dod-Chr3 54461415 54468726 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2354 131 481 Eukaryotic Initiation Factors Gene Family AT4G34110 25.823 3.82e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2354 K13161 - gmx:100806658 641.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2354 03 54461415 54468726 Dod03g2354 03 54461415 54468726 ECH