Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2319 ATGTCCGCCACTCAAGCTCCCTCCTCCTCATCCTCCGCCGCAGCCTCCAACCCGCCGGACCAGATCATGCGCCGCCAACTTCCCTTCTCCGCCATGAAGCCCCCCTTCGCCGCCGCCGCTGCCGCCGTAGATTACCACCGCTTCGTGCCCGACCAACACCACCGCCGAACTGTTGTTGACCACGAACCCGAAGCCATCGTCGTTAAGTCTCCTCACTTGAAGCGGAAGAGTGACACAGCCGATTTTGAAGCTGATTCTAGTGATAGGATGAATCTTGGATCCACTGGAGCAGCCGCTAGTCCTTTTCAGACACCGATATCTGGAAAGATAGGGAAGGGTGGCAAATCCTCCAGGCTTACAAAATGCAATAGATCTGGACCTCAAACCCCAGCCTCAAATATTGGCTCTCCTTCAGTCAATCTCACTCCTGCTGGTCCTTGCCGTTATGACAGCTCTTTAGGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAGCAAGCCGAGGATGGTATTCTTGATCTGAATAAAGCTGCTGACACATTAGAGGTTAATAGTTTTTCTTCTGGTTTTAAGATCCTTACTGTAAAGTTTAATTATTTGATGGTGCTTTTGTTTCTACAGGTGCAAAAGAGGAGAATATATGACATAACAAATGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAGCTAAAAAACAGAATTCAGTGGAAGGGACTTGATGTTTCAAGACCAGGCGAGGCTGATAATAGTTTTGCTAGTTTACAGGCAGAAGTTGAAAATCTTACAATGGAGGAGCGCCGGTTAGATGAACAAATAAGGGAGATGCAAGAACGACTACGGGATCTTAGTGAAGATGAAAACAATGAGAAGTTGCTTTTTGTCACCGAGGAAGATATAAAGAACTTGCCCTGCTTCCAGAATGAAACCTTGATTGCAATTAAAGCTCCACATGGCACCACTCTGGAAGTCCCTGATCCCGATGAGGCTGTTGATTATCCCCAGAGGAGATACAGGATAGTTCTCAGAAGCACAATGGGCCCAATTGATGTTTATCTTGTTAGTCAATTTGAAGAAAAGTTTGAGGAGATTAATGGTGAAGATGTTGCACCCAAGTTTCCATCAAATCCAGAATATAATAACCAGCAATCAACAATTGTCTTAGAGGAGAGAGGGAAGAACATAGAGGTGCAGGGACAAGATGGTCATGGGCCTAGTTCTGATTTAACTACCGCCCAGGACTTTGTGAATGGGATCATGAAGATTGTTCCTTCAGATGTTGATAGCGATTCGGATTACTGGCTTTTATCAGATGGCAATGTTAGCATAACAGACATGTGGAGAACAGAATCTGGAGTTGAATGGAATGAACTAGGTACACTTCCAGAAGATTATTGTATGACTCAAGAGCACACTACAACCCCAACTCATCCTTCAAATGTAAATGAAGCGTCTACTACTGCATCTAAGCCTACTGGAGGTTGA 1482 0.4487 MSATQAPSSSSSAAASNPPDQIMRRQLPFSAMKPPFAAAAAAVDYHRFVPDQHHRRTVVDHEPEAIVVKSPHLKRKSDTADFEADSSDRMNLGSTGAAASPFQTPISGKIGKGGKSSRLTKCNRSGPQTPASNIGSPSVNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVNSFSSGFKILTVKFNYLMVLLFLQVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADNSFASLQAEVENLTMEERRLDEQIREMQERLRDLSEDENNEKLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGEDVAPKFPSNPEYNNQQSTIVLEERGKNIEVQGQDGHGPSSDLTTAQDFVNGIMKIVPSDVDSDSDYWLLSDGNVSITDMWRTESGVEWNELGTLPEDYCMTQEHTTTPTHPSNVNEASTTASKPTGG* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2319 493 SMART E2F_TDP_2 148 238 IPR003316 GO:0005667|GO:0006355
Dod03g2319 493 Pfam E2F transcription factor CC-MB domain 254 354 IPR032198 GO:0046983
Dod03g2319 493 Gene3D - 142 240 IPR036388 -
Dod03g2319 493 Gene3D - 245 355 - -
Dod03g2319 493 MobiDBLite consensus disorder prediction 468 493 - -
Dod03g2319 493 CDD E2F_DD 253 355 IPR032198 GO:0046983
Dod03g2319 493 SUPERFAMILY E2F-DP heterodimerization region 252 355 IPR037241 -
Dod03g2319 493 MobiDBLite consensus disorder prediction 94 139 - -
Dod03g2319 493 Pfam E2F/DP family winged-helix DNA-binding domain 150 238 IPR003316 GO:0005667|GO:0006355
Dod03g2319 493 SUPERFAMILY "Winged helix" DNA-binding domain 148 236 IPR036390 -
Dod03g2319 493 MobiDBLite consensus disorder prediction 1 19 - -
Dod03g2319 493 PANTHER TRANSCRIPTION FACTOR E2FB 21 484 - -
Dod03g2319 493 Coils Coil 164 184 - -
Dod03g2319 493 PANTHER TRANSCRIPTION FACTOR E2F 21 484 IPR015633 GO:0000978|GO:0006357
Dod03g2319 493 MobiDBLite consensus disorder prediction 1 26 - -
Dod03g2319 493 MobiDBLite consensus disorder prediction 118 139 - -
Dod03g2319 493 Coils Coil 251 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2319 Dod-Chr3 53949145 53954144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2319 24 492 E2F-DP Transcription Factor Family AT5G22220 54.016 9.28e-151 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Dod03g2319 E2F_CC-MB 5.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2319 K06620 - gmx:100819817 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2319 03 53949145 53954144 Dod03g2319 03 53949145 53954144 ECH