Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2315 ATGGAGTCTAGGATGGATCAGTATGAGATCATGGAGCAGATCGGAAGAGGAGCTTTTGGAGCTGCTATTCTTGTTCTTCACAAGGCTGAGAAGAAGAAATATGTGTTGAAGAAAATCAGGCTTGCAAGGCAGACTGAAAGATGCAGAAGATCTGCTCATCAAGAGATGGCTCTTATTGCTAGAATCCAGCATCCTTACATTGTGGAATTCAAGGAGGCATGGGTTGAGAAGGGTTGCTATGTCTGTATTGTCACTGGATATTGTGAAGGAGGAGACATGGCCGAATTGATGAAAAAATCAAATGGTGCTTACTTTCCTGAGGAGAAACTCTGCAAATGGTTCACCCAATTACTGTTGGCAGTAGAGTACCTGCATTCAAATTTTGTTTTACATCGCGACCTGAAGTGTTCCAACATCTTTCTTACCAAAGATCAGGATGTTCGCCTGGGGGATTTTGGGCTCGCTAAGACTCTAAAAGCAGATGATTTGGCTTCATCGGTGGTAGGAACTCCCAATTACATGTGTCCTGAACTGCTTGCAGATATTCCTTATGGATTCAAATCTGATATTTGGTCACTAGGGTGCTGTGTGTATGAGATGGCTGCTCATCGCCCTGCTTTTAAAGCTTTTGATATGGCAGGATTGATAAGCAAGATAAACCGTTCTTCTATTGGTCCTTTGCCTCCTTGTTATTCCCCTTCCTTGAAAACACTGATAAAGGGCATGCTTAGAAAAAGTCCAGAGCATCGGCCAACAGCATCTGAGGTGTTAAAGCACCCTTATTTGCAACCTTACGTGGAGCAATATCGCCCATCTTTCAGTCCTCCGACCTCCTGTTCTCCTGAGAAACCAATCTCTTCTGTCAATTACTCTCGAAAAAGTATGGCTGAAAGTCAAAACAGTAGTAGTTCAAGTAGTGACAAAGATAGTTTGATGTCACGTGAGAGACACATTGCAATAGCAGTGCCGGAGTGTGATAACAAAGGCACTGAGACTGATCTAGCATCAATTGATGATGCTAGTGAGGAAGAACAGGATGCCAAAACAGGTGAGCAAGAGGTGATGAAACCATCTCATAATGAACACTGCTCTAATATAGAATCTAAGCAGCCAAAAACAATTAGAAATATAATGATGGCACTAAAAGAGGGAAAAATTAGAGAAGCAACTTCTCCGATGAGAGGCAATCGCATAAAGGCTGCTGGTGTATCAACCCAGAAAATAAATACAGATATATTGTCCAAATTGCCCAAACCTAATTTTACGGCTCCTGGTTTGAAGCCCAATTTAGAGTTACCAGCTGTTGCACATGCAAAGGTATCCCCTGATTCTGCAAAACGAATTCAAGGATCACATCCTTCAAAGCACCAGTTGCCGATGACAGAATCTTCACCAAAAGCTAAACCCAGATATGATTTAACTCCACCATCTGGTCTTCTCAAACAAGCAGAAGTAGATGGAGCCAAGCCATTGCAGAGGATGCCCCCTAGCTTACTTAGACGACCGCCGTTTCCAGCACGAATGCGGGCTACTGGTCCTGATGTTCCAAATGCAGCAAGTGATTCTGGGAAGCTAGCTCCAAACAGAATAGCTCAGGAGCCTGAAATGAGCCATTGTCAGTTGACCAATGGCAATGTACCACATATTGCTAGACAGGTTATGAAAGAGCCCCAGAAGGCTTTTGGAACAAGCTCCAAAGGAATGCAAACAGATAGCAGCAATTCTGCCTCGTCTTCAGTCTCTATCCCAGGATGTGAACTTTCTGATGATGCAGCAACTTTTATTGACATGAGAGAACAGATACTTCCAGGTAACGAGAGTGTAACCTGCAGTGTAGGTATGGAATCAGGTCAGGACAGCAGCCCCCCTGCAACCTGTTCACATTGTAAGAAGGTTGAAATAGGGTCTAACAAAACCTGTGAGTTTACACCTAATTTTCAGAATACTGCTAGTAGCAATGAGAAAGCAGGTTCGAGGTTAGCTCTTGATCATCCTGTTGAAGATCATAAGGTTATCTTTGCTCTGAAAAATGGTCTTCCCATCAATCATACTAATATCTCTGCTGCCTCTGGGTGTGATAAGAGGCCTGTAGACCCTCCTGCTGAAGCTGCAGAACAAGTCGAAGATCATCTAGATATTTCTAAGGAAATGACTTTAATCAAGCCTCTCAAACATCCACCCCAAAGTTCTGGAGAAATGTCTATCTGTGAAGTTGGTCCAGTAAGCAAGCCTGATCATAGGTCTGATATAGTTAGCCAGCCAGAACTTGAGTGCAAGTCACCTGGTGACGACAAATTCACGGTGAGGGAGCGACTGGCTGAAACTGTTCCATCGACAACCATTGCTAAAACATCAAGTCATAATGCTCTGCCAGAGAAAGGAATTGACATGCAGAATCCAGCACCAGAAAGGGCGGATGTTGGTCATCTTCCACTGGCCTTTGATGACGTCATCCATGTTATACGCCATAGCAGTTATCGCGTTGGGAGTGAGCAGCCAGTAAAGGAATCTGTGGAGATGGGGGTTCAAAATTTAGATGTTGGTAGGTTCGTCAACGTTGTGAGGGACGATTTAGAGACAAGAAAAGTGAGCCCACCTTTGGCCCTTAAATCTTCAAGTTGCTCTGAACCTACAAGCATGATGCCAAATACTTCTGATCAGTTGGAAACAATAAACATTACCACTCCTCCTACCCTTAAGTCACCAAGTTTCTCTGATGCTTCAAGCTTGAAATCAAGCATTTCTGATCATCCTGGTCTTAAGGAACAAGATGTGAGTAACCCTGTTTCTTTAGTTTCAGAATCTGATTCCGTCGAGTTAAGTAAATATAACACTCCCACGACTGAAGACAAACCCCCACCACTGGCAAAGGAAACATTGGATGTGAAATCTTTCAGGCAGAGAGCCGAGGCGCTCGAAGAGCTCTTAGAACTGTCTGCAGAATTGCTGCAGCAAAATAGATTGGAGGAACTTCAAGTTGTTCTGAAGCCCTTTGGGAAAGACAAGGTCTCCCCAAGGGAGACAGCCATTTGGTTAGCCAAAAGTCTTAAAGGAATGATGTCTGAGGAAACTGGGGGCCGCTGTTCATGA 3090 0.4385 MESRMDQYEIMEQIGRGAFGAAILVLHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAELMKKSNGAYFPEEKLCKWFTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCVYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKSPEHRPTASEVLKHPYLQPYVEQYRPSFSPPTSCSPEKPISSVNYSRKSMAESQNSSSSSSDKDSLMSRERHIAIAVPECDNKGTETDLASIDDASEEEQDAKTGEQEVMKPSHNEHCSNIESKQPKTIRNIMMALKEGKIREATSPMRGNRIKAAGVSTQKINTDILSKLPKPNFTAPGLKPNLELPAVAHAKVSPDSAKRIQGSHPSKHQLPMTESSPKAKPRYDLTPPSGLLKQAEVDGAKPLQRMPPSLLRRPPFPARMRATGPDVPNAASDSGKLAPNRIAQEPEMSHCQLTNGNVPHIARQVMKEPQKAFGTSSKGMQTDSSNSASSSVSIPGCELSDDAATFIDMREQILPGNESVTCSVGMESGQDSSPPATCSHCKKVEIGSNKTCEFTPNFQNTASSNEKAGSRLALDHPVEDHKVIFALKNGLPINHTNISAASGCDKRPVDPPAEAAEQVEDHLDISKEMTLIKPLKHPPQSSGEMSICEVGPVSKPDHRSDIVSQPELECKSPGDDKFTVRERLAETVPSTTIAKTSSHNALPEKGIDMQNPAPERADVGHLPLAFDDVIHVIRHSSYRVGSEQPVKESVEMGVQNLDVGRFVNVVRDDLETRKVSPPLALKSSSCSEPTSMMPNTSDQLETINITTPPTLKSPSFSDASSLKSSISDHPGLKEQDVSNPVSLVSESDSVELSKYNTPTTEDKPPPLAKETLDVKSFRQRAEALEELLELSAELLQQNRLEELQVVLKPFGKDKVSPRETAIWLAKSLKGMMSEETGGRCS* 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2315 1029 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod03g2315 1029 MobiDBLite consensus disorder prediction 291 308 - -
Dod03g2315 1029 MobiDBLite consensus disorder prediction 557 584 - -
Dod03g2315 1029 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 1 864 - -
Dod03g2315 1029 MobiDBLite consensus disorder prediction 893 948 - -
Dod03g2315 1029 SUPERFAMILY Protein kinase-like (PK-like) 4 312 IPR011009 -
Dod03g2315 1029 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod03g2315 1029 Gene3D Transferase(Phosphotransferase) domain 1 90 332 - -
Dod03g2315 1029 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod03g2315 1029 CDD STKc_Nek 7 262 - -
Dod03g2315 1029 MobiDBLite consensus disorder prediction 438 478 - -
Dod03g2315 1029 MobiDBLite consensus disorder prediction 558 584 - -
Dod03g2315 1029 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Dod03g2315 1029 MobiDBLite consensus disorder prediction 340 365 - -
Dod03g2315 1029 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Dod03g2315 1029 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 932 1012 - -
Dod03g2315 1029 MobiDBLite consensus disorder prediction 867 886 - -
Dod03g2315 1029 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 932 1012 - -
Dod03g2315 1029 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 864 - -
Dod03g2315 1029 Coils Coil 955 992 - -
Dod03g2315 1029 MobiDBLite consensus disorder prediction 291 312 - -
Dod03g2315 1029 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Dod03g2315 1029 MobiDBLite consensus disorder prediction 893 956 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2315 Dod-Chr3 53853242 53860632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2315 14 263 MAP Kinase Kinase Kinase AT1G53570 30.980 3.73e-36 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Dod03g2315 Pkinase 1.6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2315 K08857 - gmx:100784761 1488.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1444 10 34744167 34749190 Dod03g2315 03 53853242 53860632 PCT