Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2303 ATGTTCTTGTGTGATACAATGGCTGAAATTGAGGTTCCTCAATATTTTGTTTGTCCCATTTCGCTTCAGACCATGAAGGACCCTGTGACCACCATAACAGGAATAACATATGAGAGGGAAAGCATTGAGCAATGGCTGCTCAAGGCCAAAGACTGCGTGTGCCCAGTTACCAAGCAGCCATTGCCGAGAAGCTCGCAATACTTGACACCAAACCACACTCTAAAAAGGCTGATCCAAGGGTGGTGGAGCTCAGCAGAAAATGCATCATCCAAAGGCGTTGATCGAAATCCAACACATAAAGATCCTCTCGAGAAGTTCCATGTTCAGAAGCTTGTGAGGGATCTTAGAGTTCCTCAGAGATATCAAACGGCATTGGAGAAGATGCTTGCTTTGGCTACAGAAAGTGATGAGAGGAATAGAATTTGCATGATTGAGGCAGGAGTGGCCAAAGCCATGGTTATGGTGATTAACAAGTGTTTCAAGGAAGGTAACACCACGGGCCTAGAAGAAGCTCTTAGAGTCCTCAGTCTTTTGTGGAATTCATCCATGACCAACATGAAGCCTATAGTTGGAGGAAACTTGGACTTCATCAACTCTTTGACTTGGATTTTGCAGCATAACGTGCACAACAACGTAAAGATGGTAAACGAAGCCATGCCCCTATTGAAGTTGACAATTGAAGTCGCCGATTCAACCCCTTTAGGTACTTTGAACCTCGAATTCTTCAGAGAAATGGTGAGAGTATTGAGAAAGAGATCATCGCTCTCTCAACAAGCCACAAAATCCGCATTACACGTCCTCATAGATACTTGCCCCTTTAGTAGAAACCGAACGAAAATCGTGGAAGCAAGTGCAGTAGCAGAACTCATCGAGCTCGAGCTAGAAAAACCGGACAAGAGCCGATCGGAACTCATATTCAACCTTCTAGCACATCTTTGTTCATGTGCCGAAGGAAGAGAACAATTTCTGAGGCATGCTGCGGGAATTGCATTGGTTTCTAAGAGGATTTTGAGGGTTTCTTCGGCAACCGATGACCGAGCAATTCATATATTTTCGGTGATTGCTAAGTATTCGGCATCACATGATGTTGTTCTAGAGATGTTGAGGGTTGGAGCAGTGTCAAAGCTTTGCATGGTGATGCAAGCGGATTGTGCCTCATATCTGAAAGAAAAAGCAAGAGGGGTCCTTAGGCTGCATTCCAAAGTTTGGAGCAATTCTCCTTGTATACAAATTTATTTGTTGACTAGGAATCAAAGGTGA 1260 0.4405 MFLCDTMAEIEVPQYFVCPISLQTMKDPVTTITGITYERESIEQWLLKAKDCVCPVTKQPLPRSSQYLTPNHTLKRLIQGWWSSAENASSKGVDRNPTHKDPLEKFHVQKLVRDLRVPQRYQTALEKMLALATESDERNRICMIEAGVAKAMVMVINKCFKEGNTTGLEEALRVLSLLWNSSMTNMKPIVGGNLDFINSLTWILQHNVHNNVKMVNEAMPLLKLTIEVADSTPLGTLNLEFFREMVRVLRKRSSLSQQATKSALHVLIDTCPFSRNRTKIVEASAVAELIELELEKPDKSRSELIFNLLAHLCSCAEGREQFLRHAAGIALVSKRILRVSSATDDRAIHIFSVIAKYSASHDVVLEMLRVGAVSKLCMVMQADCASYLKEKARGVLRLHSKVWSNSPCIQIYLLTRNQR* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2303 419 SMART Ubox_2 15 81 IPR003613 GO:0004842|GO:0016567
Dod03g2303 419 Gene3D - 109 412 IPR011989 -
Dod03g2303 419 SUPERFAMILY RING/U-box 9 84 - -
Dod03g2303 419 Pfam U-box domain 12 85 IPR003613 GO:0004842|GO:0016567
Dod03g2303 419 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 417 - -
Dod03g2303 419 SUPERFAMILY ARM repeat 127 397 IPR016024 -
Dod03g2303 419 ProSiteProfiles U-box domain profile. 11 88 IPR003613 GO:0004842|GO:0016567
Dod03g2303 419 PANTHER WDSAM1 PROTEIN 7 417 IPR045185 GO:0061630
Dod03g2303 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 105 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2303 Dod-Chr3 53569833 53571778 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2303 9 409 U-box Gene Family AT2G35930 40.741 9.04e-95 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2303 - - gmx:100811293 582.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1425 10 34546895 34548868 Dod03g2303 03 53569833 53571778 PCT