Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2302 ATGGATGAAATTGAGGTTCCTACACCTTTTCTGTGTCCCATTTCCTTGCAACTTATGAGTGAACCTGTGGCACTGTGCACAGGAATCACTTATGATAGAGAGAACATAGAGAGATGGTTGTTCTCATGCAAGAACAACTTCTGCCCTGTCACTAAGCAACAACTGCTACACACAGATCTCACTCCAAACCACACTCTACACAGGTTGATCCAATCTTGGTGCACTCAGAATCATGCCTCACTTGGAACTGAACAAGTTCCAACTCCAAAGCCAACCATTGACAAAGCTCAAATTGTCAAGCTTTTATCACAAGCAAAGAGGTCCCCAGATGAGCAAATCAAATGCCTAAGAAGGCTCAGATCCATTGCTTTTGAATGTTCAGGTAGCAAGAACTGTTTGGAGTCTGCAGGGGCAATAGATTTCTTGGCTTCAACCATGAGGAACAACAACAACAAAAGAAAACAAGACTCAATTATGATCAGTGAAGCAGCTATTGAAGTCTTGTTCCACCTGAATCCTTCAGGATCTCAGCTTAAATATCTGATAAACGATGAGGGCATTCAGTTTCTTGAGTCTTTGTTTCAGGTCTTGAGACTTGGCAACAACCAATCTAGAGCCTATGCAACATTGATATTGAAGTCAGCATTTGAGGTGGCTGGTCCAACCCAATTGAGCAGTGTCAGAACTGAACTGTTTGTGGAGATAACAAGGGTCCTAAGGGATCAGATCTCACAGCAGTGTTCCAAGGCTGCATTGAAGCTTCTTGTGGAGCTTTGTTCATGGGGTAGGAACCGAGTCAAAGCAGTTGAGGGTGGTGCAGTACCAGTCCTCATTGACCTCCTTCTTGATGTTTCTGAGAGAAGAGTGTGTGAACTCATTTTGGTAGCTTTGGATAGACTTTGTGGCTGTGCAGAAGGGCGTGCTGAGCTGTTGAACCATGGAGCTGGTTTGGCCATTGTTTCCAAGAAGATTCTAAGGGTTTCCTATGTGGCAAGTGATAGAGGGGTCAAAATTTTGACCTCAATTTGTAGGTACTCAGCCACTCCTAGAGTACTTCAAGAAATGTTGCTAGTTGGGGCTGTGTCCAAGTTGTGTTTGGTGCTCAAGTGGGAGGGAGTTTGA 1122 0.4421 MDEIEVPTPFLCPISLQLMSEPVALCTGITYDRENIERWLFSCKNNFCPVTKQQLLHTDLTPNHTLHRLIQSWCTQNHASLGTEQVPTPKPTIDKAQIVKLLSQAKRSPDEQIKCLRRLRSIAFECSGSKNCLESAGAIDFLASTMRNNNNKRKQDSIMISEAAIEVLFHLNPSGSQLKYLINDEGIQFLESLFQVLRLGNNQSRAYATLILKSAFEVAGPTQLSSVRTELFVEITRVLRDQISQQCSKAALKLLVELCSWGRNRVKAVEGGAVPVLIDLLLDVSERRVCELILVALDRLCGCAEGRAELLNHGAGLAIVSKKILRVSYVASDRGVKILTSICRYSATPRVLQEMLLVGAVSKLCLVLKWEGV* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2302 373 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Dod03g2302 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Dod03g2302 373 PANTHER WDSAM1 PROTEIN 1 370 IPR045185 GO:0061630
Dod03g2302 373 PANTHER OS11G0573500 PROTEIN 1 370 - -
Dod03g2302 373 SUPERFAMILY RING/U-box 3 79 - -
Dod03g2302 373 Gene3D - 88 371 IPR011989 -
Dod03g2302 373 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Dod03g2302 373 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Dod03g2302 373 CDD RING-Ubox_PUB 10 53 IPR045210 -
Dod03g2302 373 SUPERFAMILY ARM repeat 98 344 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2302 Dod-Chr3 53528366 53529487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2302 2 369 U-box Gene Family AT2G35930 51.075 1.25e-128 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2302 - - gmx:100778012 541.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1424 10 34537874 34539554 Dod03g2302 03 53528366 53529487 PCT