Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2285 ATGACGGATATAAGGAAGTGGTTCATGAAATCACACGACAAGGGCAATGCAACTGCCTCCAAGCCTTCCAATCAGACTAAGCCTTCTGACGATAAACCCCAGCAGCAGAAAGCTGTGTCTGGCAGTCATGAAAGTTCTGCGAGGAGGAAAACTAGCAAGTATTTTCCCACAGACAAACAAAAGGCAAAAGATGAAAAAGAAACACAGGAGCTCCCTGCTAAACGAAAGAATATAAAGGACGACGAGGATGACAATGATGATGGAGATGACTCTGTCTTGCCTGTGAGTAAAAAGAAGTCAGCTGGTGCCACTCCGACAAAAAAACTGAAGGGTGGGTCTGGTCCGGGGATCTCCCAAAAATCTGTTGACTTGGAAGAAAGTGATGAAGATGATGAGAAAGATGCTGCTACACCTGTTAAATCTGCTGGAAGGGGCCGCGGAGGAAGAGGTGCATCAGCACAATCGACTGGTGGGAGGGGTAGAGGAGGTGGTGGGGGTGGTCGGGGTGGATTCATGAATTTTGGAGAAAGAAAAGATCCTCCGCACAAAGGAGAGAAGGTAGTCCCTGAAGGTGCTCCTGACTGTTTAGCTGGTTTAACTTTTGTAATCAGTGGAACATTGGATAGTTTGGAACGAGAAGAAGCAGAGGATTTGATTAAACGCCATGGCGGCCGTGTCACTGGATCAGTCAGTAAGAAAACGAATTATCTGTTATGTGATGAAGATATTGGTGGACGGAAGTCTTCAAAAGCCAAAGAGCTAGGAACATCGTTCCTCACAGAGGACGGGTTGTTCGATATGATTCGGGCATCGAAACCTGCAAAAGCTCCTTCACAAGAAGAATCCAAGAAGCCTGTCAATAAGCCTGTTGCAATAGCATCCCAGCCAAAATGTTCACCGAGAGCAGAAGCTAATGTCTCTCTATCTTCACGCTTACCTTCTATCAAAGCTAAGCCAAAGACTGCAACTACTGTTCAGTCTTCTTTGATGTGGACAGAGAAATATCGGCCTACAAATATGAAGGATATCATAGGGAATCAGTCACTTGTTACACAACTTCGAAATTGGTTGAAAACTTGGAATGAGCAATTTCTTGAAACTGGTAATAAAAAACACGGAAGAAAGCAAAATGACCCTGGTTCCAAAAAAGCTGTGTTGTTAAGTGGAACCCCTGGTATAGGAAAAACAACTTCAGCAAAGGTAGTCTGTCAGGAGCTTGGTTTCCGGGCAATAGAGGTAAATGCTAGTGATAGTCGTGGAAAAGCTGATAGCAAAATCGAAAAAGGAATTAGTGGAAGCAATGCAAATTCTATCAAGGAACTTGTAACCAATGAAGCCCTTGGAGCAAATATGGATCGGTCAAAGCATTCTAAAACTGTGCTCATTATGGATGAGGTTGATGGGATGTCTGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAGCATCAAGATCTCAAAAATTCCTATTATCTGCATTTGCAATGACCGTTACAGCCAGAAACTGAAAAGTCTTGTGAACTACTGTTTACTTCTTAACTTCCGGAAGCCAACAAAGCAACAGATGGCAAAGAAGTTGATGGATGTTGCAAAGGCTGAAGGCCTTCAAGTTAATGAGATTGCTCTTGAGGAACTAGCGGAAAGAGTCAATGGAGATATGCGTATGGCACTGAACCAGCTACAATATATGAGCCTTTCCATGTCTGTTATTAACTATGATGATGTTAGGCAGCGCTTTCTTACCAATTCGAAGGATGAAGACATTTCACCATTCACAGCTGTTGATAAGCTTTTTGGTTTTAATGCTACGAAGTTGAAAATGGATGAGAGGATTAGTCTTAGCATGAGTGATCCTGATCTTATTCCTCTTCTTATCCAGGAAAATTATATTAATTATAGACCAAGCTTGGCAGCTAAGGATGACAGTGGTATAAAACGCATGAACCTGATTGCCCGTGCTGCTGAGTCTATTGCTGATGGGGATGTAGTGAATGTACAGATTCGAAGATATCGACAGTGGCAGCTCTCTCAAACTAGTTCTGTTGCATCATCTATAATTCCTGCTTCATTGTTGCATGGGCAAAGAGAAATACTTGAACAGGGTGAACGGAATTTTAACCGGTTTGGTGGGTGGCTTGGGAAGAACTCAACAATGGGCAAAAACCTGAGGCTTATGGACGATCTGCATATGCACATTCTTGCTTCACGTGAATCTAGTTCGGGAAGGGATACTATCCGTTTGGAATACCTTACTCTTTTTCTCAAACATTTGACGGAACCACTGCGAGTTCTGCCCAAGGCTGAAGCTGTTGAGAAAGTTGTGGAGTTTATGAATACATACTCTATCAGTCAGGAAGATTTTGATACTATTGTAGAGCTATCAAAATTCAAGGGCCATCCTAATCCGCTAGATGGCATAGCGCCTGCAGTTAAGTCAGCTTTGACAAAAGTGTACAAAGAGCAAAGCAAGTCTAGGATGGTTAGAGCTGCAGATCTAGTCACTCTTCCTGGAATAAAGAAGGCCCCTAAGAAGCGGATTGCTGCTATTCTAGAACCAGCTGATGAAGGGGTGGAAAAAGATGAAGGTAACACCTTGGATGACAGTGAAGAAGAGAACACCTCTGACACAGAGGAGTTGGAAGGCACCGCCACTGGTGAGAAGCTGCAGTCAGAACTTCAAAGTTTGAATTCAAAGGCCATGCAAGTACAATTGGAGCTGAAGGGAGTCGGAAATTCAAGTTCCAAGAAAACATCTGGTGGTAGAGGTGCTTCTGCATCTGCGCAGAAGGCTGGCCAAACTTCAAGGGCTACTTCAAAAAGAAAAAGATGA 2832 0.4343 MTDIRKWFMKSHDKGNATASKPSNQTKPSDDKPQQQKAVSGSHESSARRKTSKYFPTDKQKAKDEKETQELPAKRKNIKDDEDDNDDGDDSVLPVSKKKSAGATPTKKLKGGSGPGISQKSVDLEESDEDDEKDAATPVKSAGRGRGGRGASAQSTGGRGRGGGGGGRGGFMNFGERKDPPHKGEKVVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTSFLTEDGLFDMIRASKPAKAPSQEESKKPVNKPVAIASQPKCSPRAEANVSLSSRLPSIKAKPKTATTVQSSLMWTEKYRPTNMKDIIGNQSLVTQLRNWLKTWNEQFLETGNKKHGRKQNDPGSKKAVLLSGTPGIGKTTSAKVVCQELGFRAIEVNASDSRGKADSKIEKGISGSNANSIKELVTNEALGANMDRSKHSKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLNFRKPTKQQMAKKLMDVAKAEGLQVNEIALEELAERVNGDMRMALNQLQYMSLSMSVINYDDVRQRFLTNSKDEDISPFTAVDKLFGFNATKLKMDERISLSMSDPDLIPLLIQENYINYRPSLAAKDDSGIKRMNLIARAAESIADGDVVNVQIRRYRQWQLSQTSSVASSIIPASLLHGQREILEQGERNFNRFGGWLGKNSTMGKNLRLMDDLHMHILASRESSSGRDTIRLEYLTLFLKHLTEPLRVLPKAEAVEKVVEFMNTYSISQEDFDTIVELSKFKGHPNPLDGIAPAVKSALTKVYKEQSKSRMVRAADLVTLPGIKKAPKKRIAAILEPADEGVEKDEGNTLDDSEEENTSDTEELEGTATGEKLQSELQSLNSKAMQVQLELKGVGNSSSKKTSGGRGASASAQKAGQTSRATSKRKR* 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2285 943 CDD BRCT_RFC1 191 269 - -
Dod03g2285 943 PANTHER REPLICATION FACTOR C SUBUNIT 1 15 918 - -
Dod03g2285 943 Coils Coil 886 906 - -
Dod03g2285 943 SUPERFAMILY BRCT domain 191 272 IPR036420 -
Dod03g2285 943 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 15 918 - -
Dod03g2285 943 MobiDBLite consensus disorder prediction 861 878 - -
Dod03g2285 943 Pfam BRCA1 C Terminus (BRCT) domain 193 268 IPR001357 -
Dod03g2285 943 PIRSF RFC1 1 920 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Dod03g2285 943 MobiDBLite consensus disorder prediction 887 935 - -
Dod03g2285 943 SMART BRCT_7 193 271 IPR001357 -
Dod03g2285 943 MobiDBLite consensus disorder prediction 175 189 - -
Dod03g2285 943 CDD AAA 380 481 - -
Dod03g2285 943 ProSiteProfiles BRCT domain profile. 191 272 IPR001357 -
Dod03g2285 943 MobiDBLite consensus disorder prediction 272 310 - -
Dod03g2285 943 SMART AAA_5 381 519 IPR003593 -
Dod03g2285 943 MobiDBLite consensus disorder prediction 16 42 - -
Dod03g2285 943 Gene3D - 518 588 - -
Dod03g2285 943 CDD HLD_clamp_RFC 518 576 - -
Dod03g2285 943 MobiDBLite consensus disorder prediction 851 943 - -
Dod03g2285 943 Gene3D - 590 699 - -
Dod03g2285 943 Pfam ATPase family associated with various cellular activities (AAA) 385 484 IPR003959 GO:0005524|GO:0016887
Dod03g2285 943 MobiDBLite consensus disorder prediction 43 82 - -
Dod03g2285 943 SUPERFAMILY post-AAA+ oligomerization domain-like 589 734 IPR008921 GO:0003677|GO:0006260
Dod03g2285 943 MobiDBLite consensus disorder prediction 1 192 - -
Dod03g2285 943 Gene3D BRCT domain 168 270 IPR036420 -
Dod03g2285 943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 329 578 IPR027417 -
Dod03g2285 943 Pfam Replication factor RFC1 C terminal domain 658 820 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Dod03g2285 943 Gene3D - 329 517 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2285 Dod-Chr3 53232710 53242363 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2285 1 899 Core DNA Replication Machinery Family AT5G22010 68.506 0.0 1133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2285 K10754 - gmx:100790070 1474.14