Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2264 ATGGAGCTTCGTTCTCATCGTCGCCTTTCCCAAATCGCGGTTTCCGTGACCGGGAAGGGGAAGCAACCCGGCGATGCTTCTGCGGAAGTTGAAACCAATAGCCAATTCAGCAATGATGTGGATGAAGATGTTTATGGAGAATATTTAAATTTAGATTTCAATTTTGAAGATGAAGAGTTTGATGGGAACATTGTTTTTGACTTGAATCAAGAACCAACTTCAAGCGTGAGTGTTTCTGATGGAGAAGACAATGCTTCTGATTCATCAGATGGTAGCAAGCCTGTATCAAAGAGGGGAAATCCTCTGTCCAGAAAGAAAAGAAAAACAGTCAACCCGCAAAATGGAGAGCCTACTGCTGTGGAGATTCAGCAGTCAGTACCTGTCAATCATTTGACTAGGAACAAGAAGAAGAAGAAGAAAGGGAGAAAATCAAGAAAGGGAGATTCTGAGAAAGTATTAATGTGGGAAGTTTGGGAAGAGGAGCAAGAGAGATGGCTTGATGAGAATCTACTGGAAGATGGTGACTTGGATCATCAAAGTGAACCATCAAATGAAACTGCCGAGCCATCCTCAGATCTGACTATGCCTTTGCTAAGGTATCAGAAGGAATGGTTAGCCTGGGCTTTGAAACAGGAAAATTCTGTGACTAGAGGAGGAATCCTTGCAGATGAAATGGGAATGGGGAAGACCATTCAAGCAATTGCCCTTGTCCTTGCTAAACGTGAATTCCACCAAATGGTGTGTGAACCAGATGATCCTTCCCCTTCAGCTGGTTCATCAAAAGTCTTGCCTGCTATCAAAGGAACACTCGTCATCTGTCCTGTGGTTGCTGTCACCCAATGGGTTACTGAAATTGATAGATTTACTTTGGAAGGAAGCACCAAGGTGCTGGTTTATCATGGGGCAAAGAGAGGGAAGAATGTTGAACAGTTCTCTGAGTATGATTTTGTAATAACAACATACTCTATTGTTGAGTCTGAGTACAGAAAATATGTGTTGCCTCCTAAGGAGAAGTGCCCATATTGTGGAAAATTATTTTACCAGAACAAGTTATCTTATCACCAGAAGTATTTTTGTGGTCCTGATGCTATTAGAACAGAAAAACAATCAAAGCAAATGAAGAAAAAGAAGAGATATGATACAAAACAGAAGAAAAAAGAAGCAAAGTATTTGAATGAAGAATTGGAACAGGGTTTTACCAAGGAAAAGGAAGTGGAAATGCGCTTGGGAGTGGACGATTTAGATGCCACAAACCGGGAGAAATCATTTCTACATGCTGTAAAGTGGCAGCGGATCATTTTGGATGAGGCACACTATATCAAATCTAGACATTGTAACACTGCAAAAGCTGTTCTTGCTTTAGAGTCTTTGTACAGATGGGCATTAAGTGGCACTCCTCTTCAGAACCGTGTTGGAGAGCTGTATTCTCTGGTACGGTTTCTGCAAATAGTTCCTTATTCCTATTACTTGTGCAAGGACTGTGACTGCAGGACACTTGATCATGGTTCCTCAAAACAATGTTCAAACTGCTGCCACAGTTCTGTTAGACATTTCTGTTGGTGGAACAAATATGTTGCCACACCAATTCAATCATATGGATATGGCGATTGTGGAAGAAGAGCTATGATATTGCTTAAGCACAAAATTTTAAAGAACATAGTTCTAAGGCGCACTAAAATAGGCAGGGCTGCGGATCTTGCACTTCCACCTAGAATTGTTTCATTAAGAAAGGATAGCCTGGATATAAAAGAGCAAGACTATTATGAATCATTATACAATGAAAGTCAGGCACAGTTTAATACATATGTTGAAGAAAATACTCTGATGAATAATTATGCTCACATATTTGACCTCCTCACACGGCTTCGTCAGGCTGTTGATCATCCATATCTTGTGGTATATTCTCAAACTGCTGCATTAAGAAGCGGGAACTTGGCTACTAATGGTAATGTTGAACAAGTATGTGGTCTCTGTGATGAGCCTGTAGAAGATTCTGTGGTTACCGCTTGTGAGCATATTTTTTGCAAGGCATGCTTGTTGGACTTCTCTGCTTCCTTGGGAAAAGCATCATGCCCCACATGCTCTAAATTACTCACTGTTGATTTAACTTCCAACAAGGATGTTGGGGTTCAGGCTAACAAAACAACAATTAAGGGTTTCAGATCATCCAGCATTTTAAACAGAATTCGGCTTGAGAACTTTCAGACAAGCACTAAAATTGAGGCATTGAGAGAAGAAATCAGATTTATGGTTGAAAGAGATGGTTCTGCAAAAGGGATTGTTTTTAGCCAATTCACGTCATTCTTGGATCTCATAAATTACTCCCTGCACAAGTCAGGTGTATCCTGTGTTCAATTGAATGGAAGCATGTCATTGGCTGCTCGGGATGCTGCCATCAAGAGATTTACTGATGATCCAGACTGCAAAATTTTTCTCATGAGCTTGAAGGCCGGCGGTGTTGCTCTCAATTTGACAGTAGCATCACATGTTTTCCTGATGGACCCTTGGTGGAACCCTGCTGTGGAGCGTCAGGCTCAAGACAGAATTCACCGGATAGGGCAATACAAACCAATCAGAATTGTGAGATTTGTTATTGAGAACACAATCGAGGAGAGGATTTTGAAGCTGCAAGAGAAGAAGGAACTAGTGTTTGAAGGGACTATAGGCGGCTCTTCTGAGGCTCTGGGGAAATTGACTGAGGCTGACTTAAAATTCCTCTTTGTCACCTAA 2730 0.4125 MELRSHRRLSQIAVSVTGKGKQPGDASAEVETNSQFSNDVDEDVYGEYLNLDFNFEDEEFDGNIVFDLNQEPTSSVSVSDGEDNASDSSDGSKPVSKRGNPLSRKKRKTVNPQNGEPTAVEIQQSVPVNHLTRNKKKKKKGRKSRKGDSEKVLMWEVWEEEQERWLDENLLEDGDLDHQSEPSNETAEPSSDLTMPLLRYQKEWLAWALKQENSVTRGGILADEMGMGKTIQAIALVLAKREFHQMVCEPDDPSPSAGSSKVLPAIKGTLVICPVVAVTQWVTEIDRFTLEGSTKVLVYHGAKRGKNVEQFSEYDFVITTYSIVESEYRKYVLPPKEKCPYCGKLFYQNKLSYHQKYFCGPDAIRTEKQSKQMKKKKRYDTKQKKKEAKYLNEELEQGFTKEKEVEMRLGVDDLDATNREKSFLHAVKWQRIILDEAHYIKSRHCNTAKAVLALESLYRWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCRTLDHGSSKQCSNCCHSSVRHFCWWNKYVATPIQSYGYGDCGRRAMILLKHKILKNIVLRRTKIGRAADLALPPRIVSLRKDSLDIKEQDYYESLYNESQAQFNTYVEENTLMNNYAHIFDLLTRLRQAVDHPYLVVYSQTAALRSGNLATNGNVEQVCGLCDEPVEDSVVTACEHIFCKACLLDFSASLGKASCPTCSKLLTVDLTSNKDVGVQANKTTIKGFRSSSILNRIRLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVSCVQLNGSMSLAARDAAIKRFTDDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSEALGKLTEADLKFLFVT* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2264 909 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 419 906 - -
Dod03g2264 909 Pfam Helicase conserved C-terminal domain 739 853 IPR001650 -
Dod03g2264 909 PANTHER - 131 387 - -
Dod03g2264 909 ProSitePatterns Zinc finger RING-type signature. 670 679 IPR017907 -
Dod03g2264 909 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 428 907 IPR027417 -
Dod03g2264 909 MobiDBLite consensus disorder prediction 64 147 - -
Dod03g2264 909 Gene3D - 574 907 IPR027417 -
Dod03g2264 909 CDD SF2_C_SNF 737 864 - -
Dod03g2264 909 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 210 484 IPR014001 -
Dod03g2264 909 Pfam SNF2-related domain 212 632 IPR000330 GO:0005524|GO:0140658
Dod03g2264 909 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 131 387 - -
Dod03g2264 909 MobiDBLite consensus disorder prediction 106 130 - -
Dod03g2264 909 MobiDBLite consensus disorder prediction 1 40 - -
Dod03g2264 909 CDD DEXDc_SHPRH-like 197 557 - -
Dod03g2264 909 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 654 710 IPR013083 -
Dod03g2264 909 Gene3D - 363 573 IPR038718 -
Dod03g2264 909 SMART helicmild6 770 853 IPR001650 -
Dod03g2264 909 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 735 899 IPR001650 -
Dod03g2264 909 ProSiteProfiles Zinc finger RING-type profile. 655 695 IPR001841 -
Dod03g2264 909 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 557 IPR027417 -
Dod03g2264 909 Gene3D - 199 338 IPR038718 -
Dod03g2264 909 MobiDBLite consensus disorder prediction 131 145 - -
Dod03g2264 909 MobiDBLite consensus disorder prediction 67 96 - -
Dod03g2264 909 SMART ultradead3 193 502 IPR014001 -
Dod03g2264 909 SMART ring_2 655 694 IPR001841 -
Dod03g2264 909 PANTHER - 419 906 - -
Dod03g2264 909 Pfam Zinc finger, C3HC4 type (RING finger) 655 694 IPR018957 GO:0046872
Dod03g2264 909 MobiDBLite consensus disorder prediction 174 193 - -
Dod03g2264 909 SUPERFAMILY RING/U-box 651 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2264 Dod-Chr3 52992420 52999852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2264 80 909 RAD5 or RAD16-like Gene Family AT1G05120 64.578 0.0 1090
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod03g2264 SNF2_N 8.7e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2264 K15083 - gmx:100798333 1337.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2264 03 52992420 52999852 Dod03g2264 03 52992420 52999852 ECH