Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2240 ATGGTTATTGGCACAAGGTTATTATTCCTCTTGGTTTTGTGCTTGTGGATTCCCACTGAAATGATGGGAAGGACAGAAGCTTCATCTACCACTGTGAATTCCACCGTTTCCTCAAGAAGAAAGGTGGTGAAAATTGGAGTCTTGTTTACTTTGAATTCTACCATTGGAAGATCAGCTAAACCAGCTATTAACGCTGCCATAGAAGATGTTAATTCTAATTCAAGCATTCTCCCTGGCATTGACCTGCAAGTTATTTTACATGACACAAATTGCAGTGGGTTTCTTGGGACAATTGAAGCTTTGCAGATGATGGAGAATGATGTGGTTGCTGCTGTTGGACCATTGTCTTCCGGAATAGCTCATGTCATCTCTCATGTGGTTAATGAGCTTCATGTACCTCTTGTATCATTTGGTGCAACTGACCCCACTCTATCTGCACTGCAATACCCATATTTCATCCGCTCTACCCATAGTGACTCTTATCAGATGCATGCAATTGCTGACTTTGTTGAATATTCCAGATGGAGGGAGGTAATTGCCATTTTTGTAGATGATGATAATGGAAGGAATGGAATTTCTGTGTTGGGCGACGCGTTGTCAATGAAACGCGCCAAGATCTCTTACAAGGCTGCCCTTCCTGTTGGGGCAACGAAAAGTGATATCAGTGACTTGTTAAATGAAATAAACTTAATGGAATCGAGGGTCTATGTTGTGCATGTTAATCCTGATTCTGGTTTGTCAATCTTTGATGCTGCCAAGCAGCTAAGAATGATGAGCTCTGGCTATGTTTGGATTGCAACAGATTGGCTTCCTTCAGTTCTTGATTCTTCTCAGACACCAGACAGTGACACATTGGATCTTTTAGACGGGGTTGTGGCTTTTCGCCATCACATTCCTGATACTGATCTCAAAAAGAGTTTCCTCTCTAAGTTGAAAAACCGGAAGGACAAGGAGACTTCAAGCTTCAATTCTTATGCATATTATGCATATGATTCCATTTGGTTAGTAGCGCGCGCCCTCGATGCTTTTCTCAATAAAGGTGGGAACATATCTTTCTCCAGTGACCCTAGGTTGCATGACACCAATGGAAGCATGCTGCATTTAGCATCACTTCGTACCTTTGATGGTGGCCCTCAATTTCGGGAGACTATTTTGGGAATGAACTTCACTGGTCTGAGTGGTCAAATTGGGTTTGACATGGATAGGAATCTAATTCGTCCATCATATGATGTTCTAAACATTGCTGGATCTGGATCCCGAAGAATTGGTTATTGGTCTAATCACTCTGGTCTCTCAGTTGTAGCTCCTGAGATTTTATATGCGAAATCATCTAACAACTCTTCAACAAGCAATCAACAACTGTACAGTGTGATATGGCCTGGAGATGCTACAACTACACCAAAAGGATGGGTATTCCCCAACAATGGAAAGCCACTGCGAATCGCAGTGCCAAATCGAGTAAGCTATAAGGAGTTTGTTTCTAAGGACAAGAACCCTCCAGGGGTACAAGGCTTTAGCATTGATGTCTTCGAAGCAGCATTAAACTTGTTGGCTTATCCTGTCCCAAAAGAATATATATTATATGGAAATGGTAAAAGGAATCCTAGCTATGATGGGCTTGTGGATCAGGTTGTAGAAAATAACTTTGATGCAGCTGTTGGAGATGTTACAATTGTCACAAATAGGACAAGGTATGTGGATTTCACTCAACCTTTCATTGAATCAGGGCTTGTTGTTGTTGTTCCTGTCAAGGAGGAGAAGTCAAGCCCCTGGTCTTTCCTCAAGCCATTCACTGCTCAAATGTGGTGTGTCACTGGTGCTTTCTTTCTTTTCGTGGGAACCGTTGTGTGGATTCTTGAGCACCGGATCAATCATGAGTTCCGTGGTCCACCAAGGAAGCAACTTATAACAGTCTTTTGGTTTAGTTTCTCAACAATGTTTTTCTCACACAGAGAGAACACTGTGAGTGCTCTTGGGCGATTGGTGCTAATCATATGGCTTTTTGTGGTGTTGATCATCAATTCAAGCTACACAGCTAGCTTGACGTCCATCCTCACTGTGCAGCAGCTATCATCACAAATCGAAGGGATTGATAGCTTGATTTCAAGTAGTCAACCAATTGGAATTCAAGATGGGTCATTTGCGCGGAAGTATCTGATAGATGAACTCAACATAGCTCAATCTAGGATAGTTACATTGAAAACCATGCAGGACTATATCGATGCCCTTCAGCGTGGCCCGAAAAATGGAGGGGTTGTGGCAGTTGTTGATGAGCTGCCTTATATTGAGATCTTGATGGCCAGCACTGACTGTAAGTTCAGAACAGTTGGGCAGGAGTTTACTAAAAGTGGCTGGGGATTTGCATTCCAGAGGGATTCTCCCCTAGCTGTTGACCTGTCAACTGCCATTCTTCAACTCTCAGAAAATGGGGACCTGCAGAAGATCCATGACAAATGGCTTAAAAAGAACAATTGCGCAAACAATGCTGTCGATTCAAACAAACTATCTTTGGCAAGCTTCTGGGGCCTCTTTCTCATATGTGGCATTGCATGTGTGGTTGCATTGATTGTGTTCTTTGTTAGAGTGTTGGGTCAATACACCAAGTTCAGCCCTGAGAATGGAGACGTTGATGAGGAGATTCAACAACCAGTGAAGCGTAGAAGGACAATGAAAACTCCTAGCTTCAAGGACTTGATTGTTTTTGTAGATAGAAAGGAAGCAGAAATCAAAGAGATACTTAGGGAGAAGAGTAAAAAAAGGAGGCGCAGCCAAAGATTGGATGATCAGTCCATTTCACCAACCTCAATTAACATGTGA 2817 0.4249 MVIGTRLLFLLVLCLWIPTEMMGRTEASSTTVNSTVSSRRKVVKIGVLFTLNSTIGRSAKPAINAAIEDVNSNSSILPGIDLQVILHDTNCSGFLGTIEALQMMENDVVAAVGPLSSGIAHVISHVVNELHVPLVSFGATDPTLSALQYPYFIRSTHSDSYQMHAIADFVEYSRWREVIAIFVDDDNGRNGISVLGDALSMKRAKISYKAALPVGATKSDISDLLNEINLMESRVYVVHVNPDSGLSIFDAAKQLRMMSSGYVWIATDWLPSVLDSSQTPDSDTLDLLDGVVAFRHHIPDTDLKKSFLSKLKNRKDKETSSFNSYAYYAYDSIWLVARALDAFLNKGGNISFSSDPRLHDTNGSMLHLASLRTFDGGPQFRETILGMNFTGLSGQIGFDMDRNLIRPSYDVLNIAGSGSRRIGYWSNHSGLSVVAPEILYAKSSNNSSTSNQQLYSVIWPGDATTTPKGWVFPNNGKPLRIAVPNRVSYKEFVSKDKNPPGVQGFSIDVFEAALNLLAYPVPKEYILYGNGKRNPSYDGLVDQVVENNFDAAVGDVTIVTNRTRYVDFTQPFIESGLVVVVPVKEEKSSPWSFLKPFTAQMWCVTGAFFLFVGTVVWILEHRINHEFRGPPRKQLITVFWFSFSTMFFSHRENTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISSSQPIGIQDGSFARKYLIDELNIAQSRIVTLKTMQDYIDALQRGPKNGGVVAVVDELPYIEILMASTDCKFRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLKKNNCANNAVDSNKLSLASFWGLFLICGIACVVALIVFFVRVLGQYTKFSPENGDVDEEIQQPVKRRRTMKTPSFKDLIVFVDRKEAEIKEILREKSKKRRRSQRLDDQSISPTSINM* 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2240 938 Gene3D - 590 710 - -
Dod03g2240 938 Gene3D - 158 431 - -
Dod03g2240 938 Coils Coil 902 929 - -
Dod03g2240 938 Pfam Receptor family ligand binding region 60 416 IPR001828 -
Dod03g2240 938 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 916 - -
Dod03g2240 938 CDD GluR_Plant 477 820 - -
Dod03g2240 938 Pfam Bacterial extracellular solute-binding proteins, family 3 488 821 IPR001638 -
Dod03g2240 938 CDD PBP1_GABAb_receptor_plant 44 435 IPR044440 -
Dod03g2240 938 PIRSF IGluLR_plant 2 937 IPR017103 -
Dod03g2240 938 Gene3D - 62 406 - -
Dod03g2240 938 SUPERFAMILY Periplasmic binding protein-like I 38 471 IPR028082 -
Dod03g2240 938 Pfam Ligand-gated ion channel 822 851 IPR001320 GO:0015276|GO:0016020
Dod03g2240 938 Gene3D - 711 825 - -
Dod03g2240 938 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 56 72 - -
Dod03g2240 938 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 116 144 - -
Dod03g2240 938 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 329 341 - -
Dod03g2240 938 PANTHER GLUTAMATE RECEPTOR 3.4 32 916 - -
Dod03g2240 938 SMART GluR_14 480 822 IPR001320 GO:0015276|GO:0016020
Dod03g2240 938 SUPERFAMILY Periplasmic binding protein-like II 455 823 - -
Dod03g2240 938 Gene3D - 471 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2240 Dod-Chr3 52500694 52507073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2240 1 787 Ion Channels AT1G05200 66.625 0.0 1113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2240 K05387 - gmx:100802782 1451.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2240 03 52500694 52507073 Dod03g2240 03 52500694 52507073 ECH