Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2237 ATGTTCCAGGAACCAAACATGATGGAAGGTGGTCATCAGCTTCACGCATTGGAGATGCCTCAGAACACATCGGAGAGAGATGACCTGAGAATCCGAGAAGACGAGTTCAACAGCGCCACTAAGTCAAGAAGTGAAAACCATGAGGGTGTGTCCGAGGAAGACCAAGACCCTCGACCCAACAAGAAGCGCTACCATCGCCACACCCAGCACCAGATCCAGGAGATGGAAGCTTTCTTCAAGGAGTGTCCGCACCCAGATGACAAGAAGAGGAAGGAGTTGAGCCGGGAGTTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTTCCAGAATAAGCGCACTCAAATGAAGGCCCAGCAAGAACGCATTGAGAACTCTAAGCTTAGAGATGAAAATGACAAGCTTAGAGCAGATAACATGATGTATAGGGAAGCTCTTATAAAAGCCTCTTGTCCTGATTGTGGTGGACCAACAGCTAAAGATGCAGTGTCGTTCCATGAACATCACCTGAGGCTTGAAAATGCCCGTCTAAAAGAAGAGATTGATAGGATTTCAGCAATGGCTGCCAATGCCAAGCATCAAGGCAAGCAGCCTGTGGTGGACTATTCAGGCATCTCCCCTCCTCTCCCACTACGTCCATTAGAACTCAATGTTGGTGGCGGCAGCTCCGGTGGCCGGCCAGTGGGTGGTGGTGGTGGCGGCGGTGCGAAAGACCTCTTGAGGTCAATTAATGGACCCACTGAAGCCGACAAGCCAATGATAATAGAGCTTGCTGTTGCAGCCATGGAGGAGCTCGTTGGGATGGCACAAATGGGCGAGCCTCTATGGCTGACGGCCACCATTGATGGCCCTGCCACCTTGCTCGATGAGGATGAGTACATCAGAACCTTCCCTCGTGGAATTGGTCCGAAACCCGCTGGCTTCAGACGTGAAGCATCACGAGAAACCGCTGTTGTTGCCATGAACCATGTTAACCTCGTTGGGATTCTCATGGATGTGAACCAGTGGTCCACAGTGTTCTCTGGTCTAGTCTCAAGAGCCATGACTCTAGAAGTGCTATCAACAGGAGTAGTGGCCGGGAACTACAATGGTGCCTTACAAGTGATGGCAGCAGAATTACAAGTACCTTCCCCTCTTGTGCCAACTCGAGAGAGCTACTTTGTAAGGTATAGTAAAAAACATGCAGATGGGACTTGGGCAGTGGTGGATGTGTCTTTGGATAATTTGCTCCCTGGCCCTTCACCAAGTTATAGAAGAAGGCCTTCTGGTTGCTTAGTTCAAGAAATGCCCAATGGCCAATCAAAGGTAACATGGGTTGAACATGCGGAAGTGGATGGTCGAGGTGTTCATAACCTCTACAAGCACCTTGTTAGCTCTGGACATGCATTTGGTGCAAAACGTTGGGTTGCAACCTTGGATCGACAATGTGAGAGGCTCGCTAGTGCTATGGCATCGTCAAACGTTCCCACAGCAGATGTTGGCGTGATAACAAGCCAAGGAGGGAGGAAGAGCATATTGAAATTGGCTGAGAGAATGGTAATAAGCTTTTGCGGTGGAGTAAGTGCTTCCACTGCACAAACATGGACTAGACTCAGTGGGGCCGGGGCTGGTGACGTGAGGGTGATGACCCTCAAGAGTGTAGATGACCCTGGAAAACCTCATGGCATTGTTCTCAGTGCCGCAACTTCTTTTTGGCTTCCCGTTGCACCCAAAAGAGTTTTTGACTTCCTCCGTGCTGAGAACTCAAGAAGTGAGTGGGATATTCTTTCCAATGGTGGAGTTTTACAAGAAAGAGCTCACATTGCAAGTGGACAAGACAGTGGAAATCGTGTGTCTCTACTCAGGGTGAATAATAGTAACAATTCAAGCCAGAGCAACATGTTGGTGTTGCAAGAGAGCTGCACCGATTCCAGTGGCTCTTTTGTCATTTATGCCCCTGTGGATATATCTGCCATTAATGTGGTCCTAAATGGAGGGGACCCAGACTTTGTAGCCCTTCTTCCTTCAGGGTTTGCTATACTCCCAGATGGCACCACAGAGCATGCAAGTGGCATTGCTGAAACTAATGGTCCTGGTGGATCTCTCTTGACTGTTGCATTCCAAATACTGGTTGATTCATCTCCCACAGCTAAGCTATCTCTTGGATCTGTTTCTACTGTCAACCATCTTGTTGAGCTCACTGTTAAGAGAATCAAGGATTCCTTGTCTGGTGAAGCTGCTGCTTGA 2223 0.489 MFQEPNMMEGGHQLHALEMPQNTSERDDLRIREDEFNSATKSRSENHEGVSEEDQDPRPNKKRYHRHTQHQIQEMEAFFKECPHPDDKKRKELSRELGLEPLQVKFWFQNKRTQMKAQQERIENSKLRDENDKLRADNMMYREALIKASCPDCGGPTAKDAVSFHEHHLRLENARLKEEIDRISAMAANAKHQGKQPVVDYSGISPPLPLRPLELNVGGGSSGGRPVGGGGGGGAKDLLRSINGPTEADKPMIIELAVAAMEELVGMAQMGEPLWLTATIDGPATLLDEDEYIRTFPRGIGPKPAGFRREASRETAVVAMNHVNLVGILMDVNQWSTVFSGLVSRAMTLEVLSTGVVAGNYNGALQVMAAELQVPSPLVPTRESYFVRYSKKHADGTWAVVDVSLDNLLPGPSPSYRRRPSGCLVQEMPNGQSKVTWVEHAEVDGRGVHNLYKHLVSSGHAFGAKRWVATLDRQCERLASAMASSNVPTADVGVITSQGGRKSILKLAERMVISFCGGVSASTAQTWTRLSGAGAGDVRVMTLKSVDDPGKPHGIVLSAATSFWLPVAPKRVFDFLRAENSRSEWDILSNGGVLQERAHIASGQDSGNRVSLLRVNNSNNSSQSNMLVLQESCTDSSGSFVIYAPVDISAINVVLNGGDPDFVALLPSGFAILPDGTTEHASGIAETNGPGGSLLTVAFQILVDSSPTAKLSLGSVSTVNHLVELTVKRIKDSLSGEAAA* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2237 740 Gene3D - 45 134 - -
Dod03g2237 740 MobiDBLite consensus disorder prediction 221 242 - -
Dod03g2237 740 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677
Dod03g2237 740 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981|GO:0006355
Dod03g2237 740 CDD START_ArGLABRA2_like 250 476 - -
Dod03g2237 740 Coils Coil 108 144 - -
Dod03g2237 740 Gene3D - 307 473 IPR023393 -
Dod03g2237 740 MobiDBLite consensus disorder prediction 1 69 - -
Dod03g2237 740 SMART START_1 255 477 IPR002913 GO:0008289
Dod03g2237 740 Pfam START domain 256 477 IPR002913 GO:0008289
Dod03g2237 740 SUPERFAMILY Bet v1-like 500 731 - -
Dod03g2237 740 SUPERFAMILY Homeodomain-like 49 119 IPR009057 -
Dod03g2237 740 Pfam Homeodomain 61 116 IPR001356 GO:0003677
Dod03g2237 740 CDD homeodomain 61 119 IPR001356 GO:0003677
Dod03g2237 740 MobiDBLite consensus disorder prediction 21 61 - -
Dod03g2237 740 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 17 736 IPR042160 -
Dod03g2237 740 SMART HOX_1 60 122 IPR001356 GO:0003677
Dod03g2237 740 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 17 736 - -
Dod03g2237 740 Coils Coil 173 193 - -
Dod03g2237 740 ProSiteProfiles START domain profile. 246 480 IPR002913 GO:0008289
Dod03g2237 740 SUPERFAMILY Bet v1-like 246 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2237 Dod-Chr3 52474518 52483273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2237 1 739 Homeobox Transcription Factor Family AT1G05230 69.693 0.0 1003
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dod03g2237 START 4.2e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2237 K09338 - gmx:100782260 1099.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2237 03 52474518 52483273 Dod03g2237 03 52474518 52483273 ECH
Dod10g1371 10 33906963 33938331 Dod03g2237 03 52474518 52483273 PCT