Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2220 ATGGAACCTCTATGTGAGTGTTGTGGGGCTGTGAGAGCCGTGGTTTACTGCAAGTCAGATTCTGCACGTCTATGCTTGAATTGTGATGAATGTGTGCACTCTGCCAATTATTTGTCTTTGAGGCACCTTCGTTCTCTTCTATGTGACAAGTGCAATTCCCAGCCAGCAATTGTGCACTGCATTGAGGACAAGTTGTCTTTGTGCCAAGCTTGTGACTGGAACCAAAATGGGTGCTCAGTTTTGGGGCACAGGCGCCAGGCTTTGGATTGTTACAAGGGTTGCCCTTCTTTCACTGAGTTGCCTGGTTTCTTGTCCTTTGTGCTTGATGGTTCTTCCTCAGTACATGGTTGTGGTTCATATGATACATTGCCTAGAAGTGATAGCTGCACTAGCAAGTGTTTGGAGCACCCAGATAATAATAACAACAACAACAACAACAATAATAATTATGAAGATGGATTCTTTGGTTTGGTGAGTGGGAATTTGAAAGAAACAGAGGCATGTGTTAAGTATGAGCTTTGGATGGATCAATCTTCTAGTTCCACCATTCCACCAAATCCGAACTACATGCCATACACAAGGGACCAAGCAAATTTCTTTCCTCATGACTCAAACCTGCCTAAGGAATGTCTGGATTTCAATGATCTAGGAATCCTTGATGGTGATGGTCTCAACATGGATAATTTTCAATTTAACTTTGAAAATAGTGATGAAATATTTGACTTTTCTCAACTTGCCACAAGATACCAACTTGGTAATGGAGGAATGGACTGTGGATTAACGGGAAAAAACATATCCCTAACAGAATCTAATGCTCTTATTGAGAGTGCAATGGAGGCATCATCATTAGTCCAACAAGATTGTGTAGATTTTCAGCCATCCAAGGCTGCTTGTTCAGCTAGTGAGATGCAGGGAATCAACAGTAATGCAAATTGTGTACTTATGCCTCCTAACTGCAATGAAAACAACGATCTCAGTTTCCTACAGGGTCAAGTTCATTCAAGCATATCACTTCCATTTCCCAATCTCACTGGTGAAGCTAGTGCCACTAATTATCAAGATTGTGGATTGTCATCAATGTTCCTAAAAGGCGAGTTCCCTTGGGAATTGAATTCAAAGGCTGCATGCAAACAAGCCAGAGCAAAAGCTATGTTTAGATACACTGAGAAAAGGAAAACTCGAAAGTTTGGCAAGCAAATAAGATATGAATCTCGCAAAGCAAGGGCTGATTCAAGAAAACGTGTGAAAGGTAGATTTGTGAAAGCAAGTGAACCATGTGATGATGATCCTCAAGGGACAAGGAATGCCTAA 1311 0.4134 MEPLCECCGAVRAVVYCKSDSARLCLNCDECVHSANYLSLRHLRSLLCDKCNSQPAIVHCIEDKLSLCQACDWNQNGCSVLGHRRQALDCYKGCPSFTELPGFLSFVLDGSSSVHGCGSYDTLPRSDSCTSKCLEHPDNNNNNNNNNNNYEDGFFGLVSGNLKETEACVKYELWMDQSSSSTIPPNPNYMPYTRDQANFFPHDSNLPKECLDFNDLGILDGDGLNMDNFQFNFENSDEIFDFSQLATRYQLGNGGMDCGLTGKNISLTESNALIESAMEASSLVQQDCVDFQPSKAACSASEMQGINSNANCVLMPPNCNENNDLSFLQGQVHSSISLPFPNLTGEASATNYQDCGLSSMFLKGEFPWELNSKAACKQARAKAMFRYTEKRKTRKFGKQIRYESRKARADSRKRVKGRFVKASEPCDDDPQGTRNA* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2220 436 MobiDBLite consensus disorder prediction 402 428 - -
Dod03g2220 436 CDD Bbox1_BBX-like 4 36 - -
Dod03g2220 436 ProSiteProfiles Zinc finger B-box type profile. 43 88 IPR000315 GO:0008270
Dod03g2220 436 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Dod03g2220 436 ProSiteProfiles CCT domain profile. 380 422 IPR010402 GO:0005515
Dod03g2220 436 Pfam CCT motif 380 422 IPR010402 GO:0005515
Dod03g2220 436 PANTHER CCT MOTIF FAMILY PROTEIN-RELATED 2 431 - -
Dod03g2220 436 MobiDBLite consensus disorder prediction 402 436 - -
Dod03g2220 436 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 431 - -
Dod03g2220 436 SMART bboxneu5 48 88 IPR000315 GO:0008270
Dod03g2220 436 SMART bboxneu5 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2220 Dod-Chr3 52192696 52195228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2220 1 430 C2C2-CO-like Transcription Factor Family AT3G21880 37.413 3.21e-78 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dod03g2220 CCT 6.4e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2220 - - gmx:100804738 531.561