Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2219 ATGTGCAAAGGGGCGGAAGAAGGAATGCATGGCGTTGGTTTCTGCAGGAGCTTAACACCTGAAGAGGCTGCTTCATATGGGGCAACAAGAGTTTCAACATCTTGTGAGCTGTGTGGTTTGCAGGCTTCATTGTATTGCCAAGCTGATGATGCTTATTTGTGTAGAAAATGTGACAAATGGGTTCACAAAGCCAACTTTTTGGCCCTTAGACACATACGGTGCTTTTTGTGCAACACATGTCAGAACCTTACAAGAAGGTATCTAATTGGAGCTTCAATAGAGGTCATTCTTCCAGCCACCTTAAGCTGGACCACAGAAAACCTTCCTAACAACAGCACCAATAGAGATTGTTCAAAAACACAAGACATCCCTTTCAAGTTTCTCTAA 387 0.4315 MCKGAEEGMHGVGFCRSLTPEEAASYGATRVSTSCELCGLQASLYCQADDAYLCRKCDKWVHKANFLALRHIRCFLCNTCQNLTRRYLIGASIEVILPATLSWTTENLPNNSTNRDCSKTQDIPFKFL* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2219 128 Pfam B-box zinc finger 33 71 IPR000315 GO:0008270
Dod03g2219 128 SMART bboxneu5 30 76 IPR000315 GO:0008270
Dod03g2219 128 CDD Bbox1_BBX-like 35 76 - -
Dod03g2219 128 PANTHER B-BOX ZINC FINGER PROTEIN 29 20 102 - -
Dod03g2219 128 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 20 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2219 Dod-Chr3 52189882 52191031 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2219 1 128 C2C2-CO-like Transcription Factor Family AT3G21890 42.424 3.79e-28 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dod03g2219 zf-B_box 3.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2219 - - gmx:100500322 173.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2219 03 52189882 52191031 Dod03g2219 03 52189882 52191031 ECH
Dod10g1355 10 33726112 33728367 Dod03g2219 03 52189882 52191031 PCT