Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod03g2208 | ATGGCGTCTTTATTTGGCTGCACCAACCAGAACAGAAATGAGCGCAAGAAAGATTCACTTTCTCTTGATACTCCAGTACAGTATATTCAGATTATTGACCCAAAGAAAGCACAGAATTTGTCAATTCTTTTGAGAGCTTTAAATGTGACAACAGATGAAGTTATTGACGCCCTTAAAGAAGGTCATGAAGTTCCTATTGAGCTCATCCAGACATTGTTGAAGATGGCACCAACAGCAGAGGAGGAATTGAAGCTTAGGTTATTCACAGGGAGAGCTTTCTCAACTTGGCCCCGCAGAGAGGTTTCTTGCAACAAACTCAGAAAAAGCAGGCTATTCTTAAAACTACTAGAAGCAGTTCTCAAAACCGGCAACCGCATGAACGATGGTACCTACCGCGGTGGCGCACAAGCATTCAGGCTTGACACCCTTCTGAAGCTATCAGATGTGAAAGGAACAGACGGCAAGACAACACTGCTACACTTTGTGGTTCAAGAGATCATTCGTTCTGAAGGGATAAGAGCTGCTAAGAACAACCAAAGAAAGCAGCAACAGCATGTCCAGTGCCTAAGCAGTGAACTTGATGATGTGAAAAAAGCTGCAATCATAGAGGGTGATGCACTCAGTGCTGCAGTGTCAAAACTTAACAGCTCCCTCACCAAGACTCAAGAGTTCCTCAACTCTGACCTCAAGAACCTTGAAGAAGAGACTGAGTTCAAAAGCTGCATGGAGAGGTTTGCGGAGAAGGCGAAATCGGAGGTGAAGTGGCTGGTTGATGAGGAGAAGAGGATAATGGCACTTGTTAAGAGCACTGCAGATTACTTCCACGGGACTGCAGGTAGAGATGAAGGGCTGAGATTGTTTTTGATTGTGCGCGATTTCTTGATCATATTGGACAATGTGTGCAAAGAGGTGAAGAACACTACAATGAAGGCAGCTAAGGCTTCTTCTCTGAGGAAAGAGTCCGCATCATCAATGCCGTCTTCTCCGGACGATTGCCAACAGAACTTGCCACCTTCTGATATGCATAGGAGGCTGTTTCCTGCAATTGCAGGGCGGAGAATGGATTACGACTCTTGCTCTGACGATGATGATGACTTTTCTTCATAA | 1107 | 0.4499 | MASLFGCTNQNRNERKKDSLSLDTPVQYIQIIDPKKAQNLSILLRALNVTTDEVIDALKEGHEVPIELIQTLLKMAPTAEEELKLRLFTGRAFSTWPRREVSCNKLRKSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFRLDTLLKLSDVKGTDGKTTLLHFVVQEIIRSEGIRAAKNNQRKQQQHVQCLSSELDDVKKAAIIEGDALSAAVSKLNSSLTKTQEFLNSDLKNLEEETEFKSCMERFAEKAKSEVKWLVDEEKRIMALVKSTADYFHGTAGRDEGLRLFLIVRDFLIILDNVCKEVKNTTMKAAKASSLRKESASSMPSSPDDCQQNLPPSDMHRRLFPAIAGRRMDYDSCSDDDDDFSS* | 369 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod03g2208 | 368 | Gene3D | Formin, FH2 domain | 100 | 344 | IPR042201 | - | |
| Dod03g2208 | 368 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 27 | 314 | - | - | |
| Dod03g2208 | 368 | MobiDBLite | consensus disorder prediction | 313 | 343 | - | - | |
| Dod03g2208 | 368 | PANTHER | FORMIN-RELATED | 99 | 180 | IPR027643 | GO:0003779|GO:0030036|GO:0045010|GO:0051015 | |
| Dod03g2208 | 368 | SMART | it6_source | 3 | 312 | IPR015425 | - | |
| Dod03g2208 | 368 | Coils | Coil | 215 | 235 | - | - | |
| Dod03g2208 | 368 | MobiDBLite | consensus disorder prediction | 313 | 335 | - | - | |
| Dod03g2208 | 368 | PANTHER | FORMIN-RELATED | 1 | 91 | IPR027643 | GO:0003779|GO:0030036|GO:0045010|GO:0051015 | |
| Dod03g2208 | 368 | PANTHER | FORMIN-LIKE PROTEIN | 1 | 91 | - | - | |
| Dod03g2208 | 368 | PANTHER | FORMIN-RELATED | 184 | 365 | IPR027643 | GO:0003779|GO:0030036|GO:0045010|GO:0051015 | |
| Dod03g2208 | 368 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 1 | 323 | IPR015425 | - | |
| Dod03g2208 | 368 | PANTHER | FORMIN-LIKE PROTEIN | 184 | 365 | - | - | |
| Dod03g2208 | 368 | Gene3D | Formin, FH2 domain | 1 | 99 | IPR042201 | - | |
| Dod03g2208 | 368 | Pfam | Formin Homology 2 Domain | 102 | 297 | IPR015425 | - | |
| Dod03g2208 | 368 | Pfam | Formin Homology 2 Domain | 3 | 90 | IPR015425 | - | |
| Dod03g2208 | 368 | PANTHER | FORMIN-LIKE PROTEIN | 99 | 180 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dod03g2208 | Dod-Chr3 | 51848351 | 51850895 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dod03g2208 | 1 | 355 | FH2 protein (formin) Gene Family | AT5G54650 | 48.936 | 2.81e-123 | 375 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod03g2208 | - | - | lja:Lj3g3v2888350.1 | 487.263 |