Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2180 ATGGTTCGAACACCTTCATGTGACAAGAGTGGACTGAGGAAAGGTACTTGGACTCCTGAGGAAGATAGGAAGTTAATTGCTTATGTCACTAGGTATGGCAGCTGGAATTGGCGCCAATTGCCCAGGTTTGCAGGTCTGGCTAGGTGTGGGAAGAGTTGCAGATTGAGGTGGATGAATTACCTAAGGCCTAACCTCAAAAGAGGGAACTTCACTCAAGAAGAAGAAGATATTATCATCAGATCACACTCAAAGCTTGGGAATAGATGGTCTGCCATTGCTGCTCAATTACCAGGCAGAACAGATAACGAAATCAAGAACCATTGGCACACCACACTCAAGAGGCGCTTTCAACAAAACGAAGCCACAAATGAAGAACAACCATCCAAATCCTCCAAATCCAAAGATAAAGAAACCACCCCAGGAAAGGACTCGGTGCTCAATTTCCAAGCTACAGATCCTGCAGCTATTAATTCCCAAATCTCAGACAGCAGCAGCACCGCCACCACCACTGCCCCATTATCACCACTATCGTCCTCCTCAAGTGAATTCTCCTTCTCCATAACTTCTTCAGGTCACAGTCAGAACACTGCTGCCAGTAACGAAAACTTGTTGATTGATGATGACTTCTTCTCTTTTCTGGATGGAAGTTTCTGGACAGAACCATATCTGGCTGACATTTTGTCCACTCCGACAAGTGATGATAGTAATAATAATAATCTTGAACTAGTGCCAAGTGATGATGGCAATCATGGTACTGGTGCCTTTCAAAGTACGCAAGATACTACTACCACACAGATCTTCGATGCTTGTGCAAGTTTTGTTGATCTCGAGAACGAGTTTGGGAGCTTGCGTGATGAGTCTCACATACAGCCAACAGTTGAAAGCTTTTGGACTCAGCCAGATGTGTCTGACGTGTCCCACGTTCCATCTGAATACTTTTCACCATTGTGTGGGGCAGATCTTTGGAGCACTCAAATTAATATGTATGATGAATACATTAGCTTGTTCTAA 1011 0.4411 MVRTPSCDKSGLRKGTWTPEEDRKLIAYVTRYGSWNWRQLPRFAGLARCGKSCRLRWMNYLRPNLKRGNFTQEEEDIIIRSHSKLGNRWSAIAAQLPGRTDNEIKNHWHTTLKRRFQQNEATNEEQPSKSSKSKDKETTPGKDSVLNFQATDPAAINSQISDSSSTATTTAPLSPLSSSSSEFSFSITSSGHSQNTAASNENLLIDDDFFSFLDGSFWTEPYLADILSTPTSDDSNNNNLELVPSDDGNHGTGAFQSTQDTTTTQIFDACASFVDLENEFGSLRDESHIQPTVESFWTQPDVSDVSHVPSEYFSPLCGADLWSTQINMYDEYISLF* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2180 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dod03g2180 336 CDD SANT 69 112 IPR001005 -
Dod03g2180 336 CDD SANT 16 61 IPR001005 -
Dod03g2180 336 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod03g2180 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dod03g2180 336 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod03g2180 336 MobiDBLite consensus disorder prediction 115 178 - -
Dod03g2180 336 Gene3D - 6 67 - -
Dod03g2180 336 MobiDBLite consensus disorder prediction 127 141 - -
Dod03g2180 336 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 232 - -
Dod03g2180 336 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 232 - -
Dod03g2180 336 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dod03g2180 336 MobiDBLite consensus disorder prediction 142 178 - -
Dod03g2180 336 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Dod03g2180 336 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod03g2180 336 SMART sant 66 114 IPR001005 -
Dod03g2180 336 SMART sant 13 63 IPR001005 -
Dod03g2180 336 Gene3D - 68 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2180 Dod-Chr3 51375672 51377873 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2180 1 238 MYB Transcription Factor Family AT2G31180 43.933 2.68e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod03g2180 Myb_DNA-binding 1.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2180 K09422 - gmx:778184 301.212