Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2176 ATGGTGAGAGCACCTTATGTTGATGAGAATGGAATAAAGAAAGGTGCATGGAGTGAGGAAGAGGACAAGAGGCTTGTAGCTTACATTGAGAGACATGGTCATCCGAATTGGCGTCAACTCCCAAAGTTTGCAGGTTTGGCAAGATGTGGAAAGAGTTGCAGGCTTCGTTGGATGAATTACCTGCGCCCAAATCTAAAACGAGGGAACTACACCCAAAAGGAAGAGCAAATAATCATGGGGTTGCATAAAGAACATGGAAACAAATGGTCTCTGATTGCTGAGAATCTACCTGGAAGAACGGACAACGAGATAAAGAACTACTGGCATAGCCACCTAAAGAAGTTCCTAAAACGCAATGAAACGACAACATGCGATGTAGATGATGATGATGATGATGATGAGCTGAAGTCCAAGCCTTCTTCAGAGTGTACAGAACATGATGAAATGCCAAAAAGCGAGATCGTTAGTGGTGATTATTCACACCATATCTTGGAAAGTTCGTTGTCCAACATGTCCTCGGAAACATCCTACACTGAAGACAACAACTCCCTTTCATTTTCCTCTGGTCGTGTAGTGTATAACAGAGAGGACGATAGCGTTGCTTCATGGGAAACATTTGATGGGTTCAGCTCCAATTTTTGGACTGAACCGTTTATTTGTGAAAATGCATTGAGTCATGATTACTATTACATGCCGGAGAGAGACGAAGAATTTTCAATATGGTGA 726 0.4229 MVRAPYVDENGIKKGAWSEEEDKRLVAYIERHGHPNWRQLPKFAGLARCGKSCRLRWMNYLRPNLKRGNYTQKEEQIIMGLHKEHGNKWSLIAENLPGRTDNEIKNYWHSHLKKFLKRNETTTCDVDDDDDDDELKSKPSSECTEHDEMPKSEIVSGDYSHHILESSLSNMSSETSYTEDNNSLSFSSGRVVYNREDDSVASWETFDGFSSNFWTEPFICENALSHDYYYMPERDEEFSIW* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2176 241 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod03g2176 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dod03g2176 241 CDD SANT 69 112 IPR001005 -
Dod03g2176 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dod03g2176 241 CDD SANT 16 61 IPR001005 -
Dod03g2176 241 MobiDBLite consensus disorder prediction 126 149 - -
Dod03g2176 241 SMART sant 66 114 IPR001005 -
Dod03g2176 241 SMART sant 13 63 IPR001005 -
Dod03g2176 241 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 233 - -
Dod03g2176 241 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod03g2176 241 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Dod03g2176 241 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod03g2176 241 PANTHER MYB TRANSCRIPTION FACTOR 1 233 - -
Dod03g2176 241 Gene3D - 68 141 - -
Dod03g2176 241 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dod03g2176 241 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2176 Dod-Chr3 51238087 51239870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2176 1 116 MYB Transcription Factor Family AT5G16770 67.241 1.32e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod03g2176 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2176 K09422 - gmx:100781032 341.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2176 03 51238087 51239870 Dod03g2176 03 51238087 51239870 ECH
Dod10g1322 10 33236553 33241464 Dod03g2176 03 51238087 51239870 PCT