Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2169 ATGGGTAGAGCTCCTTGCTGTGACAAGAATAATGGCCTCAAGAAAGGTCCATGGACCCCAGAGGAAGATCTTACGCTCATCAACTACATTCAAACTCATGGACCAGGAAACTGGCGAGCCCTCCCAAAGAATGCTGGTCTGCAAAGATGTGGCAAGAGTTGCCGCCTTCGATGGGCAAATTACCTGAGACCCGATATCAAGAGAGGAAGATTCTCCTTTGAAGAAGAAGAGACTATTATTCAGTTGCATAGTATCTTGGGAAACAAATGGTCGGCAATAGCAGCTAGGCTTCCAGGAAGAACAGACAATGAAATAAAGAACTATTGGAACACTCACATCAGGAAGAGGTTGCTTCGGATGGGAATTGATCCAGTTACTCACGCGCCACGCCTTGACCTGCTTGACGTGAACTCAATTCTAAGGTCACTGCTAGGAAACCCTTCCCTTTTGAATCTTCAAGGCCTCTTGGGCAATGCTCAGGCCTTGATGTACCCTGAGCTGTTAAATCTGGCTTCTCTTTTATCTACCAAGAACAATGAGAACACTGATTTGGCCTCACAAAATATTCTACAACAAATTCTATCAGGGAATTGTCAAGTTCAAAACCAAGTTGGCCCAAAACAAGAGTATGGCCAGTTTAATAATACCCCACCAACTCATCAAGAAACTAATATTGAAGGCTTTTTAGGCAACATGGCACACTTGAGCTGTTCAAATTCACCACAGAATTCAACTCCTTCCTATGGCGAGAACCTTGTTTTGCAACAAAACCAAGTTGGCTTGTTAAGGGACCAGGGTCATTTGGTCCAATCCTTAATCAATGTAAACCAAGACTTGGGCTATGACTCGGTACTATCGAGCCCAAACCAGATGAATTCATCATCCACGTATGTGAATGGCAGCACGGAGGAAGAGAGGGATAGCTATTGCAGTGAATTGTTCAAGTTCGAAATTCCGGAGAGTCTCGATATTAGTGATTTCTTGTAA 987 0.4387 MGRAPCCDKNNGLKKGPWTPEEDLTLINYIQTHGPGNWRALPKNAGLQRCGKSCRLRWANYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHAPRLDLLDVNSILRSLLGNPSLLNLQGLLGNAQALMYPELLNLASLLSTKNNENTDLASQNILQQILSGNCQVQNQVGPKQEYGQFNNTPPTHQETNIEGFLGNMAHLSCSNSPQNSTPSYGENLVLQQNQVGLLRDQGHLVQSLINVNQDLGYDSVLSSPNQMNSSSTYVNGSTEEERDSYCSELFKFEIPESLDISDFL* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2169 328 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Dod03g2169 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Dod03g2169 328 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 323 - -
Dod03g2169 328 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Dod03g2169 328 Gene3D - 70 117 - -
Dod03g2169 328 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Dod03g2169 328 SMART sant 67 115 IPR001005 -
Dod03g2169 328 SMART sant 14 64 IPR001005 -
Dod03g2169 328 CDD SANT 70 113 IPR001005 -
Dod03g2169 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Dod03g2169 328 Gene3D - 14 67 - -
Dod03g2169 328 PANTHER TRANSCRIPTION FACTOR MYB41 1 323 - -
Dod03g2169 328 CDD SANT 17 62 IPR001005 -
Dod03g2169 328 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Dod03g2169 328 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2169 Dod-Chr3 51045190 51046795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2169 1 328 MYB Transcription Factor Family AT4G21440 50.997 4.60e-100 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod03g2169 Myb_DNA-binding 4.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2169 K09422 - gmx:102668351 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2169 03 51045190 51046795 Dod03g2169 03 51045190 51046795 ECH
Dod10g1318 10 33087615 33088874 Dod03g2169 03 51045190 51046795 PCT