Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2160 ATGAAGGTTGCTTCCTTCTTCATCAGAGCCTCCACTGCTATCAAAAGATACCCTTCATCCTCCAAGCTTCTGCTTCTCTGCGCTCTCAGTGGTGGAGGTGTAGTGGCATACTCAGAATCACAATCAGAAACTGAACGTCCTATTATTGATGCTAATGAGGCGACAAAAAAGAAAGTGGTGGTTCTTGGAACAGGATGGGCTGGTACCAGTTTCCTTAAGGATCTGGATGCTTCATTATATGACGTTCAGGTTGTTTCACCTCGTAACTACTTTGCATTTACTCCCTTATTACCCAGTGTCACTTGTGGGACAGTTGAAGCACGGAGCATTGTGGAGCCAGTCCGAAACATCATTAAAAAGGGAAAAGGAGAAATAAAATATTGGGAGGCAGAATGTCTCAAGATTGATGCTGCAAACAAGAAGGTTTTTTGTCAGTCCAATATTGATAACTTAGTGGGAAGTGGCGAATTTTCTTTGGACTATGACTTGTTGGTTCTAGCAGTAGGAGCACAAGTAAATACTTTTAACACACCAGGTGTCAAGGAGAACTGTCATTTTCTGAAGGATGTTGAGGATGCTAAGAAGATCCGACTGTCTATCACAGATTGCTTTGAGAAGGCCGTTCTTCCTAGTCTATCTGAAGAAGAGCAAAGATCAAATCTTCATTTTGTAGTTGTTGGAGGGGGTCCAACTGGTGTGGAATTTGCTGCAGAGCTGCATGATTATGTCACAGAAGACTTAATAAAATTATATCCAACTGTTAAAAATATAGTGACGATAACATTGATTCAATCCGGAGATCACATCCTGAACATGTTTGATCAAAGAATAAGTTCATTTGCTGAGCAGAAGTTTATGAGAGATGGTATAGACATTCTAACAGGATGCCGTGTTATCAATGTTAGCGACAAAGAAATTACTATGAAGGTGAAATCAACAGGAGAGGTTTGCTCTGTGCCCCACGGATTGGTTGTCTGGTCCACTGGCATTGCAACTATTCCAGTTGTAAGGGACTTCATGGAAGAAATTGGTCAGGCTAAAAGGCGTGTACTAGCAACTGATGAATGGTTGCGAGTAAAAGGATGCGAAGATGTGTATGCCATTGGTGATTGTTGCACAATAAATCAACGCAAAATCATGGACGATATCTTAGCCATATTTAAGGCTGCGGACAAAAATAACTCCGGTACCTTAACGTTTGAAGAGTTCCAGGATGTGATGGATGACATCATCTTAAGATATCCCCAAGTTGAAGTCTATTTGAAGAGCAAACATCTTCTAGATTTATCCACCTTGTGGAAAGATTCGCAAGGGAATGAAAGAAAGGAAATAGACATAGAAGGGTTTAAGCTGGCTCTTTCTCATGCAGATTCACAGATGAAGAGTCTGCCTGCAACTGCACAGGTTGCTGCCCAACAAGGTGCATATCTAGCTAGATGCTTTAACCGCATGGATCACTGTGAAGAGCAGCCTGAAGGTCCTCGACGATTTAGAGGGACTGGACGTCATAAGTTTCTTCCCTTCCGGTATAAGCATTTTGGGCAATTTGCTCCTCTTGGTGGGGAGCAGGCAGCTGCAGAACTCCCTGGTGACTGGGTTTCCATTGGCCAGAGCACTCAATGGCTTTGGTATTCTGTATATGCAAGCAAGCAAGTGAGCTGGCGCACAAGGGTGCTGGTCATATCTGATTGGACAAGAAGATTCATATTTGGGAGGGACTCAAGTCGTGTTTAA 1734 0.4273 MKVASFFIRASTAIKRYPSSSKLLLLCALSGGGVVAYSESQSETERPIIDANEATKKKVVVLGTGWAGTSFLKDLDASLYDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIIKKGKGEIKYWEAECLKIDAANKKVFCQSNIDNLVGSGEFSLDYDLLVLAVGAQVNTFNTPGVKENCHFLKDVEDAKKIRLSITDCFEKAVLPSLSEEEQRSNLHFVVVGGGPTGVEFAAELHDYVTEDLIKLYPTVKNIVTITLIQSGDHILNMFDQRISSFAEQKFMRDGIDILTGCRVINVSDKEITMKVKSTGEVCSVPHGLVVWSTGIATIPVVRDFMEEIGQAKRRVLATDEWLRVKGCEDVYAIGDCCTINQRKIMDDILAIFKAADKNNSGTLTFEEFQDVMDDIILRYPQVEVYLKSKHLLDLSTLWKDSQGNERKEIDIEGFKLALSHADSQMKSLPATAQVAAQQGAYLARCFNRMDHCEEQPEGPRRFRGTGRHKFLPFRYKHFGQFAPLGGEQAAAELPGDWVSIGQSTQWLWYSVYASKQVSWRTRVLVISDWTRRFIFGRDSSRV* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2160 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 59 78 - -
Dod03g2160 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 222 240 - -
Dod03g2160 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 161 179 - -
Dod03g2160 577 PANTHER EXTERNAL ALTERNATIVE NAD(P)H-UBIQUINONE OXIDOREDUCTASE B1, MITOCHONDRIAL 52 577 - -
Dod03g2160 577 ProSitePatterns EF-hand calcium-binding domain. 391 403 IPR018247 -
Dod03g2160 577 SUPERFAMILY FAD/NAD(P)-binding domain 56 274 IPR036188 -
Dod03g2160 577 SUPERFAMILY EF-hand 339 463 IPR011992 -
Dod03g2160 577 SUPERFAMILY FAD/NAD(P)-binding domain 222 376 IPR036188 -
Dod03g2160 577 Gene3D - 434 577 - -
Dod03g2160 577 Gene3D - 46 398 - -
Dod03g2160 577 ProSiteProfiles EF-hand calcium-binding domain profile. 378 413 IPR002048 GO:0005509
Dod03g2160 577 SMART efh_1 382 410 IPR002048 GO:0005509
Dod03g2160 577 Pfam EF hand 383 408 IPR002048 GO:0005509
Dod03g2160 577 Pfam Pyridine nucleotide-disulphide oxidoreductase 57 379 IPR023753 GO:0016491
Dod03g2160 577 PANTHER NADH DEHYDROGENASE 52 577 IPR045024 GO:0003954|GO:0006116
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2160 Dod-Chr3 50960782 50967555 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2160 1 577 Chloroplast and Mitochondria Gene Families AT4G21490 64.089 0.0 770
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2160 K03885 - gmx:100793566 988.793