Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2129 ATGGGTGCTCTTGAGTTTACACTTCTCTACTTGATTTTCTTACATTCATGCAAGATTGCTGCTTACAAGGACGAAGAATGGAAGAAAGCCACTGCAACATACACAAAGGACATAGAAGGATCTCTCATTACAGAAGGAGCTTGTGGTTATGGAGACCTGCACAAGGCTAGCTATGGGAAATACAGTGCTGGTTTAAGCACAATTTTGTTCGACAGAGGGAGTGCTTGTGGGGCTTGCTATGAGATAAGATGTGTTGACCACATCTTGTGGTGTGTGATGGGGAGCCCAACTGTCGTTGTTACTGCTACAGATTTCTGTGCTCCAAATTATGGGCTCTCAGTTGATTATGGTGGCTGGTGCAATTTTCCAAGGGAGCATTTTGAGATGTCACAGGCTGCATTCTCTGAAATTGCCAAGCGGAAAGCTGATATAGTGCCGGTTCAGTATAGAAGAGTCAGGTGTCAAAGAAGTGGTGGCTTGAAATTCACAATGAGTGGAAGTTCTCACTTCTATCAAGTCCTGATTACCAATGTTGGACTGGATGGTGAGGTGGTTGCTGTGAAAGTGAAGGGATCTAGAACAGGATGGATACCTATGGCAAGGAACTGGGGACAAAACTGGCATTGCAATGTCAACCTTCAACATCAGCCTCTGTCCTTTGAGGTAACCATCAGCAGTGGAAAAACACTCACATCTTACAATGCAGCCCCAGCAAACTGGCAGTTTGGACAGTACATTTGA 741 0.448 MGALEFTLLYLIFLHSCKIAAYKDEEWKKATATYTKDIEGSLITEGACGYGDLHKASYGKYSAGLSTILFDRGSACGACYEIRCVDHILWCVMGSPTVVVTATDFCAPNYGLSVDYGGWCNFPREHFEMSQAAFSEIAKRKADIVPVQYRRVRCQRSGGLKFTMSGSSHFYQVLITNVGLDGEVVAVKVKGSRTGWIPMARNWGQNWHCNVNLQHQPLSFEVTISSGKTLTSYNAAPANWQFGQYI* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2129 246 Pfam Lytic transglycolase 63 149 IPR009009 -
Dod03g2129 246 PRINTS Expansin/Lol pI family signature 234 246 IPR007118 GO:0005576
Dod03g2129 246 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Dod03g2129 246 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Dod03g2129 246 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Dod03g2129 246 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Dod03g2129 246 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Dod03g2129 246 Gene3D - 13 155 IPR036908 -
Dod03g2129 246 SMART dpbb_1 62 149 IPR007112 -
Dod03g2129 246 PANTHER EXPANSIN-A20 3 244 - -
Dod03g2129 246 Pfam Expansin C-terminal domain 161 237 IPR007117 -
Dod03g2129 246 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Dod03g2129 246 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Dod03g2129 246 PRINTS Expansin signature 234 246 IPR002963 GO:0009664
Dod03g2129 246 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Dod03g2129 246 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Dod03g2129 246 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Dod03g2129 246 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Dod03g2129 246 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Dod03g2129 246 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Dod03g2129 246 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 246 IPR007117 -
Dod03g2129 246 Gene3D - 159 246 IPR036749 -
Dod03g2129 246 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 159 IPR007112 -
Dod03g2129 246 PANTHER EXPANSIN-A15 3 244 IPR002963 GO:0009664
Dod03g2129 246 SUPERFAMILY Barwin-like endoglucanases 10 177 IPR036908 -
Dod03g2129 246 SUPERFAMILY PHL pollen allergen 156 245 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2129 Dod-Chr3 50313218 50315008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2129 3 243 Expansin Gene Family AT4G38210 62.140 7.14e-115 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2129 - - gmx:100809013 460.299