Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2123 ATGGCCTTGAATCAGTACTTGGAGGAGGCTGTGCCCCGAACCGCTTCCGCTGAAGATATACCATCCTTAGAAAAGCGGAAATCTTCCGGTGACGGCACTGCAGATTCTGAAAGAAATGCCCCTGGCAGCTTTGACTGCAACATCTGCCTTGATTGTGTGCAAGATCCAGTAGTCACTCTTTGTGGCCACCTCTACTGCTGGCCCTGCATTTACAAATGGCTTCATTCCCAAAGTATCTCTCCCAAAGATGTAGAACAGCAGAATCCACAATGTCCAGTATGCAAATCAGAAGTATCTCAATCCTCTTTAGTTCCACTGTATGGTCGCGGCCTAGCCGCAACACCCTCCGAAGGAAAGGCACATCAACCAGGGGTCGCCATACCAAGAAGGCCTCTTGGCCCCAGATCATACAATGCTACAGCTGTTTCCGAATCCCCTTCTCGTCAAACTTATCATCGTCATCAATTCAACTCAATTCCAGGCAGTTACCCCTCACCAATGCTCAGCACGAGTGGTCCACTAGATAGGACATTTGGGGACTTTGGTGAGATGATATATGCAAGGGTCTTTGGTAACCAGATGACGAACGTATACACATATTCAAATTCCTACAACCTTTCGGAGAGTAGTAACCCGAGGATAAGGAGGCATTTAATGCATGCTGATAAGTCACTCGGTAGAATATGTGTTTTCCTCCTCTGCTGCGTAATTGTGTGTCTTCTCCTATTCTGA 732 0.4727 MALNQYLEEAVPRTASAEDIPSLEKRKSSGDGTADSERNAPGSFDCNICLDCVQDPVVTLCGHLYCWPCIYKWLHSQSISPKDVEQQNPQCPVCKSEVSQSSLVPLYGRGLAATPSEGKAHQPGVAIPRRPLGPRSYNATAVSESPSRQTYHRHQFNSIPGSYPSPMLSTSGPLDRTFGDFGEMIYARVFGNQMTNVYTYSNSYNLSESSNPRIRRHLMHADKSLGRICVFLLCCVIVCLLLF* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2123 243 Pfam Zinc finger, C3HC4 type (RING finger) 46 94 IPR018957 GO:0046872
Dod03g2123 243 SUPERFAMILY RING/U-box 39 100 - -
Dod03g2123 243 ProSiteProfiles Zinc finger RING-type profile. 46 95 IPR001841 -
Dod03g2123 243 MobiDBLite consensus disorder prediction 19 33 - -
Dod03g2123 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 107 IPR013083 -
Dod03g2123 243 MobiDBLite consensus disorder prediction 1 37 - -
Dod03g2123 243 MobiDBLite consensus disorder prediction 114 144 - -
Dod03g2123 243 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Dod03g2123 243 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 4 243 - -
Dod03g2123 243 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 4 243 IPR045103 GO:0005783|GO:0006511|GO:0061630
Dod03g2123 243 SMART ring_2 46 94 IPR001841 -
Dod03g2123 243 CDD RING-HC_AtRMA_like 44 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2123 Dod-Chr3 50208229 50211901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2123 23 243 C3H Transcription Factor Family AT4G28270 39.823 8.89e-48 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2123 K10666 - gmx:100785491 295.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2123 03 50208229 50211901 Dod03g2123 03 50208229 50211901 ECH