Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dod03g2123 | ATGGCCTTGAATCAGTACTTGGAGGAGGCTGTGCCCCGAACCGCTTCCGCTGAAGATATACCATCCTTAGAAAAGCGGAAATCTTCCGGTGACGGCACTGCAGATTCTGAAAGAAATGCCCCTGGCAGCTTTGACTGCAACATCTGCCTTGATTGTGTGCAAGATCCAGTAGTCACTCTTTGTGGCCACCTCTACTGCTGGCCCTGCATTTACAAATGGCTTCATTCCCAAAGTATCTCTCCCAAAGATGTAGAACAGCAGAATCCACAATGTCCAGTATGCAAATCAGAAGTATCTCAATCCTCTTTAGTTCCACTGTATGGTCGCGGCCTAGCCGCAACACCCTCCGAAGGAAAGGCACATCAACCAGGGGTCGCCATACCAAGAAGGCCTCTTGGCCCCAGATCATACAATGCTACAGCTGTTTCCGAATCCCCTTCTCGTCAAACTTATCATCGTCATCAATTCAACTCAATTCCAGGCAGTTACCCCTCACCAATGCTCAGCACGAGTGGTCCACTAGATAGGACATTTGGGGACTTTGGTGAGATGATATATGCAAGGGTCTTTGGTAACCAGATGACGAACGTATACACATATTCAAATTCCTACAACCTTTCGGAGAGTAGTAACCCGAGGATAAGGAGGCATTTAATGCATGCTGATAAGTCACTCGGTAGAATATGTGTTTTCCTCCTCTGCTGCGTAATTGTGTGTCTTCTCCTATTCTGA | 732 | 0.4727 | MALNQYLEEAVPRTASAEDIPSLEKRKSSGDGTADSERNAPGSFDCNICLDCVQDPVVTLCGHLYCWPCIYKWLHSQSISPKDVEQQNPQCPVCKSEVSQSSLVPLYGRGLAATPSEGKAHQPGVAIPRRPLGPRSYNATAVSESPSRQTYHRHQFNSIPGSYPSPMLSTSGPLDRTFGDFGEMIYARVFGNQMTNVYTYSNSYNLSESSNPRIRRHLMHADKSLGRICVFLLCCVIVCLLLF* | 244 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dod03g2123 | 243 | Pfam | Zinc finger, C3HC4 type (RING finger) | 46 | 94 | IPR018957 | GO:0046872 | |
Dod03g2123 | 243 | SUPERFAMILY | RING/U-box | 39 | 100 | - | - | |
Dod03g2123 | 243 | ProSiteProfiles | Zinc finger RING-type profile. | 46 | 95 | IPR001841 | - | |
Dod03g2123 | 243 | MobiDBLite | consensus disorder prediction | 19 | 33 | - | - | |
Dod03g2123 | 243 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 107 | IPR013083 | - | |
Dod03g2123 | 243 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Dod03g2123 | 243 | MobiDBLite | consensus disorder prediction | 114 | 144 | - | - | |
Dod03g2123 | 243 | ProSitePatterns | Zinc finger RING-type signature. | 61 | 70 | IPR017907 | - | |
Dod03g2123 | 243 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RMA1 | 4 | 243 | - | - | |
Dod03g2123 | 243 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 4 | 243 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Dod03g2123 | 243 | SMART | ring_2 | 46 | 94 | IPR001841 | - | |
Dod03g2123 | 243 | CDD | RING-HC_AtRMA_like | 44 | 96 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dod03g2123 | Dod-Chr3 | 50208229 | 50211901 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Dod03g2123 | 23 | 243 | C3H Transcription Factor Family | AT4G28270 | 39.823 | 8.89e-48 | 155 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Dod03g2123 | K10666 | - | gmx:100785491 | 295.434 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Dod03g2123 | 03 | 50208229 | 50211901 | Dod03g2123 | 03 | 50208229 | 50211901 | ECH |