Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2106 ATGGATCATTTGGGAGGTCAACATTCTTCTTCAACCACCAAGGTTGAAAGAAGGCTTATAGAGAAAAACAGAAGGAACCAGATGAAGATCCTCTACTCCAAACTCAACTCTCTTCTCCCTAACTATAACCCCAAGGAAGCATTACCACTGCCTGATCAAGTGGATGAGGCCATCAACTACATCAAGAGCCTAGAGCAAAAAGTGAAGATGGCTCAGGAGAAGAAAGAGGGCTTATTGGGAAGGAAGCGATCACGTGGTTGCAGCTCCTCCAGTGCTTTGACGGGATGCCCGAAATCGACACAACTTGAGATTCACGAAATGGGTTCTTGTCTAGAAGTTGCCATGACTTGTGGGTTAGAGAACCAGTTCGTTTTCCATGAAATCATCCGAATACTGCATGAAGAGAACATAGATGTTAAGAGTGCCAATTCCACACTGGCCGGAGATTCAATGCATCATGTTGTGCATGCAGAGATTCCGCAATCTTTGCTTCAATTTGGGGCTACCAAAGTAAGTGAGAGATTGAAAAGGTTTGTGAATGGATCAGCCAGTGATATTGAAATACAGCCCGAGTGGTGGGATCTTGAAATTGATTCTGACATGTGGGGCTTCTAG 615 0.4455 MDHLGGQHSSSTTKVERRLIEKNRRNQMKILYSKLNSLLPNYNPKEALPLPDQVDEAINYIKSLEQKVKMAQEKKEGLLGRKRSRGCSSSSALTGCPKSTQLEIHEMGSCLEVAMTCGLENQFVFHEIIRILHEENIDVKSANSTLAGDSMHHVVHAEIPQSLLQFGATKVSERLKRFVNGSASDIEIQPEWWDLEIDSDMWGF* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2106 204 SMART finulus 18 70 IPR011598 GO:0046983
Dod03g2106 204 Pfam Helix-loop-helix DNA-binding domain 15 65 IPR011598 GO:0046983
Dod03g2106 204 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 8 186 IPR015660 GO:0003700|GO:0006357
Dod03g2106 204 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 12 64 IPR011598 GO:0046983
Dod03g2106 204 Coils Coil 54 81 - -
Dod03g2106 204 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 8 186 - -
Dod03g2106 204 Gene3D - 6 90 IPR036638 GO:0046983
Dod03g2106 204 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 81 IPR036638 GO:0046983
Dod03g2106 204 MobiDBLite consensus disorder prediction 74 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2106 Dod-Chr3 49898241 49900505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2106 15 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 38.983 2.82e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod03g2106 HLH 5.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2106 - - gmx:100817883 304.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2106 03 49898241 49900505 Dod03g2106 03 49898241 49900505 ECH