Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2101 ATGGCTTGCAGGAGCAGCTTTTCACGTCAGATGACACGGAAATATGATGTGTTTGTGAGCTTCACAGGTGACACGCGCAATAATTTCACTGATCATCTCTTTGGTGCTCTCCACAGAAAAGGCATTCTAACCTTTAGGGATGACACAAAGCTCAATAAAGGAGAACCGATTTTAACAGAGCTTCTACAAGCAATTGAAGGGTCTCGGGCTTTAGTAGTTGTCTTCTCAAAGAACTATGCTTCATCAACATGGTGCTTGCGAGAGCTGGCAAAGATAGCTGATTGCTTTAAAGGGTCAGGAAGTCATGTTTTACCTGTTTTTTATGACGTGAATCCATCTGAGGTGCGGAAACAAAGTGGGAATTATGAGAAAGCCTTTGTGGAGCATGAAGAAAGATTCAAGGAAGACCTGGACATGATGGTGCAAGTGCAAAAATGGAGGGAAGCTTTAACACAAGTGGCCAATCTCTCTGGTTGGGATATAAGGGACAAGCCACAATATATGGAGATTGAAAAGATTGTTAGTCACATAATAAGAATACTAGGTGACATATCTTCAAGTCTTCCAAATGATCTAGTTGGGATTCAGTTACCTGTAGAAGAGCTAGCACAACATTTACATTTGGGCTCAAATAGTGATGTTCGAATGGTAGGAATTTGTGGAATGGGTGGCATAGGAAAAACAACTGTTGCTACTATTTTATATGACAAAATCTCTCGTCAATATGATGCTTGCTGTTTTATTAATGATGTGAATAGCATTTATCAAAATTATGGTGCAATTGGTGTACAAAAGCAACTTCTCTCTCAAATTCTAAATGAGGAAAACCTTCAGATATGCAATCTTTCTAAAGTAACTCATTTGATAAGAAGTAGGTTACATCACTTAAGGGTCTTTATAGTTCTTGATAATGTTTATCGAGTTGAACAACTTGAAAAATTAGCTATAAATCGTGAATGGTTGGCTGCTGGGAGTAGAATCATCATAATTTCTAGAGATGGATACATCTTAAAAGAGCATGGAGTGGATATAGTTTACAATGTTCAACTCTTGAATAAGGATGACGCTCTTCAATTATTTTGTAGAAAAGCTTTCAAAGGTCATGATATTCAGATAGGTTATGAACAGTTGACATATGACATATTACATTATGTTAATGGCCTTCCATTGGCAATTAAAGTATGGGGTTCATTTTTGTTTGGTTGA 1206 0.3731 MACRSSFSRQMTRKYDVFVSFTGDTRNNFTDHLFGALHRKGILTFRDDTKLNKGEPILTELLQAIEGSRALVVVFSKNYASSTWCLRELAKIADCFKGSGSHVLPVFYDVNPSEVRKQSGNYEKAFVEHEERFKEDLDMMVQVQKWREALTQVANLSGWDIRDKPQYMEIEKIVSHIIRILGDISSSLPNDLVGIQLPVEELAQHLHLGSNSDVRMVGICGMGGIGKTTVATILYDKISRQYDACCFINDVNSIYQNYGAIGVQKQLLSQILNEENLQICNLSKVTHLIRSRLHHLRVFIVLDNVYRVEQLEKLAINREWLAAGSRIIIISRDGYILKEHGVDIVYNVQLLNKDDALQLFCRKAFKGHDIQIGYEQLTYDILHYVNGLPLAIKVWGSFLFG* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2101 401 Pfam NB-ARC domain 198 399 IPR002182 GO:0043531
Dod03g2101 401 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 159 IPR035897 -
Dod03g2101 401 ProSiteProfiles TIR domain profile. 13 181 IPR000157 GO:0007165
Dod03g2101 401 SMART till_3 14 156 IPR000157 GO:0007165
Dod03g2101 401 PRINTS Disease resistance protein signature 292 306 - -
Dod03g2101 401 PRINTS Disease resistance protein signature 216 231 - -
Dod03g2101 401 PRINTS Disease resistance protein signature 385 399 - -
Dod03g2101 401 Gene3D - 11 183 IPR035897 -
Dod03g2101 401 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 401 IPR044974 GO:0006952
Dod03g2101 401 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 401 IPR027417 -
Dod03g2101 401 Pfam TIR domain 14 187 IPR000157 GO:0007165
Dod03g2101 401 Gene3D - 184 345 IPR027417 -
Dod03g2101 401 Gene3D - 350 401 IPR042197 -
Dod03g2101 401 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 20 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2101 Dod-Chr3 49719784 49731633 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2101 12 397 WRKY Transcription Factor Family AT4G12020 27.506 1.76e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2101 - - mtr:MTR_4g080777 533.487