Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2097 ATGCGAAACCCACCACCATCTTCCATGGCCTCGAAGGAGAAGGAGCAGGCTCTGAAGAAGATCAACAACAACAACAAGAAGAACAAGAACAAGATCAACAGCAACAATGGCGATAACAACAAGGAGGTGCACTACAGAGGCGTGAGGAAGAGGCCGTGGGGCCGTTACGCTGCTGAGATCAGGGACCCTTGCAAGAAGAGCCGCGTCTGGCTCGGCACCTTCGACACCGCCGAGGAAGCCGCCAGGGCCTACGACGCTGCCGCAAGGCAGTTCCGCGGCCCCAAGGCCAAGACCAACTTCCCCACTTATTCGTCTCCCAACGAAAACACCAACGTCAACATCAACAGCATCGTTAACCACAACAACAGCAACAAAAACAACCAGAGCCCCAGCCAGAGCAGCACCGTGGAGTCTTCCACGCCGGAGTGTGAGGTCACGCGCCGCCGCGATGGTGCGGTCATGGACCGGTTCCCTTTCCTGCCGCTGCAGCCGCCGCCGCAGCTCGTGCAGTTTGGCGTAGGCGGAGGTGCGGTTGTTGATGGCATGGTGACCCCCATGCGGCCGATTTTCTTCCTGGACCCGGCCGCCGCGCAGGCCGAGTTTCTGGCCCAGCGGTTCCCTGTCGGGTTTGAACCGGTTCCAGTCGATTTTCAGGCCGGGTTCAGTGGGGTGGCCCAGAGTGACTCGGATTCTTCGTCCGTCTTTGATTGTCAGCCCAAGACAACTCTCAATCTCGATCTTAACCTCGCTCCGCCAATGGACGCTTAA 768 0.5872 MRNPPPSSMASKEKEQALKKINNNNKKNKNKINSNNGDNNKEVHYRGVRKRPWGRYAAEIRDPCKKSRVWLGTFDTAEEAARAYDAAARQFRGPKAKTNFPTYSSPNENTNVNINSIVNHNNSNKNNQSPSQSSTVESSTPECEVTRRRDGAVMDRFPFLPLQPPPQLVQFGVGGGAVVDGMVTPMRPIFFLDPAAAQAEFLAQRFPVGFEPVPVDFQAGFSGVAQSDSDSSSVFDCQPKTTLNLDLNLAPPMDA* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2097 255 CDD AP2 44 101 IPR001471 GO:0003700|GO:0006355
Dod03g2097 255 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Dod03g2097 255 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Dod03g2097 255 MobiDBLite consensus disorder prediction 95 147 - -
Dod03g2097 255 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 35 238 - -
Dod03g2097 255 MobiDBLite consensus disorder prediction 97 141 - -
Dod03g2097 255 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Dod03g2097 255 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Dod03g2097 255 Coils Coil 11 31 - -
Dod03g2097 255 MobiDBLite consensus disorder prediction 27 41 - -
Dod03g2097 255 Pfam AP2 domain 44 93 IPR001471 GO:0003700|GO:0006355
Dod03g2097 255 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 35 238 - -
Dod03g2097 255 Gene3D AP2/ERF domain 43 103 IPR036955 GO:0003700|GO:0006355
Dod03g2097 255 MobiDBLite consensus disorder prediction 21 46 - -
Dod03g2097 255 SUPERFAMILY DNA-binding domain 44 102 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2097 Dod-Chr3 49541454 49542869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2097 41 253 AP2-EREBP Transcription Factor Family AT5G44210 46.296 3.63e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod03g2097 AP2 2.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2097 K09286 - gmx:100775465 182.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2097 03 49541454 49542869 Dod03g2097 03 49541454 49542869 ECH
Dod03g2097 03 49541454 49542869 Dod03g0450 03 5477469 5479287 ECH