Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2088 ATGGGTCAGGACCACCACAAGGGGAAGCAGGGCAAGGAGGAGAAGGCGAGGGAAGAGGTCCGGTACCGCGGGTTGCGGCGGCGGCCATGGGGGAAGTACGCGGCGGAGATTAGAGATCCATCAAAGCAAGGGGCTAGGCTGTGGTTGAGGACCTTTGACACTGCCGAAGAAGCGGCTAGAGCTTATGACCGTGCAGCCTTTAACATGAGGAATCATCTTGCAATTCTCAATTTCCCTAATGAGTACTATTCTCAAATAAGGGGGTCACCACCTTATCCACCGCATTTGGCGACACCCTCTTCTTCCTCTCCACACCCTCATCATCCTAGTGGCAGTTCTAGTTCTTCTGGTCCTCAGCAAAGGGACGTTATTGAGTTCGAGTGCGTGGATGGTCACGTGTTGGAGGCTCTTCTTGAGTCGGAGGAGCAGAAGAAGAAAAAGTAG 444 0.5338 MGQDHHKGKQGKEEKAREEVRYRGLRRRPWGKYAAEIRDPSKQGARLWLRTFDTAEEAARAYDRAAFNMRNHLAILNFPNEYYSQIRGSPPYPPHLATPSSSSPHPHHPSGSSSSSGPQQRDVIEFECVDGHVLEALLESEEQKKKK* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2088 147 PANTHER DNA-BINDING DOMAIN 4 142 IPR044808 GO:0003700|GO:0009873
Dod03g2088 147 MobiDBLite consensus disorder prediction 1 25 - -
Dod03g2088 147 MobiDBLite consensus disorder prediction 101 121 - -
Dod03g2088 147 ProSiteProfiles AP2/ERF domain profile. 21 79 IPR001471 GO:0003700|GO:0006355
Dod03g2088 147 Gene3D AP2/ERF domain 20 80 IPR036955 GO:0003700|GO:0006355
Dod03g2088 147 SUPERFAMILY DNA-binding domain 21 80 IPR016177 GO:0003677
Dod03g2088 147 MobiDBLite consensus disorder prediction 84 124 - -
Dod03g2088 147 Pfam AP2 domain 21 72 IPR001471 GO:0003700|GO:0006355
Dod03g2088 147 PANTHER ETHYLENE RESPONSE FACTOR 4 142 - -
Dod03g2088 147 SMART rav1_2 21 85 IPR001471 GO:0003700|GO:0006355
Dod03g2088 147 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Dod03g2088 147 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Dod03g2088 147 CDD AP2 21 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2088 Dod-Chr3 49280796 49281539 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2088 19 145 AP2-EREBP Transcription Factor Family AT3G23230 61.417 1.29e-46 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod03g2088 AP2 1.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2088 - - tcc:18603202 170.629