Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2061 ATGCTGGAAAACATGGATGATGGAGAAGTTTCAAACGGTTTCACTCATCAGAATCCAAGTTCTGTTGCATCTAAAAATCCTTCAGGATTGAAGGGGAAGAGAAACCTCCCAGGAAACCCAGATCCTGAAGCTGAAGTGATAGCCTTATCCCCAAAGACCCTCATGGCCACAAATAGATTCCTGTGTGAAACTTGTGGGAAGGGTTTTCAAAGAGATCAAAACCTTCAACTCCATAGACGCGGACACAACCTTCCTTGGAAGCTGAAGCAAAGGACCAGCAGTGAACCAAGGAAGAGGGTGTATGTGTGCCCAGAGAAGACCTGCGTCCACCACCACCCTTCAAGGGCACTCGGAGATTTGACTGGGATAAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGAGAAGTGCTCAAAGCGTTATGCCGTGCAGTCAGACTGGAAAGCACACTCAAAGACCTGTGGTACAAGAGAATACAAATGTGACTGTGGAACCATCTTTTCACGGAGGGATAGCTTCATCACTCACAGGGCCTTCTGTGATGTCTTGGCAGAAGAAACAGCTAGGGTAAATGCAGCATCAAGCATAAACAACTCATTAGGGGGCAACATTGGTTACAAAATCATGGGAACTTCCCTTGGCCCTAATAACATGGCAACCCATTTTTCTTCAATTTTCAAGCCAATTTCAAGCACTGAAGATACCAGCAGTAATCAAACATCTAGGGGACTATCCCTTTGGATGGGTCAAGCATCTCAACCTCATCATGAAACAATGGCTAATAATGGCGATTTGCGTGAGATTCATCATCAACTTGGGTCAGCCACAAGCGAAGGAACAATATATGGTACAGGGAACCCACTTGTTGAAAGCTCAAATCCTCCACCTTCTAGTTATCAGCTGAGTTGGGTGCTTGGGACTAAACTTTCACCCAGTGCAAGCCAAGAGCTAACTAGCACCACTGCATCACTTCCACTAGGCAATAATAATATTGTTAAGGATGCTCCAAGCCAGCTTATAAGCGTTCCTTCCTTGTACAGCTCCCAACACCAATCCCACCAAACAAGTTCAGCAAACAATATGTCAGCAACAGCTTTGTTGCAAAAAGCTGCTCAAATTGGTGCAACCTCAACTGACCCTTCATTCTTGGGGACCTTAGGATTGAAGTGCAGTAGCAGTCAAGGCCAAGATGGGAACAAGTTCTGCGGTATATACGGTTCAGGTTTAGTAGTAACAACCAGTCTTGGGAGTGATGCAGAGAACTCTGCATGTGACTTGTCACATATGCACCCTGCAAAACGGAGGAGACATGTGCAGAATGAAGACAGTGGAGGGGGGCAAACTAGGGATTTTCTTGGTGTTGCCGGTGTAAACCATTTGCCACCCTTCATCAATGAACGGATGGATTTTATTTGA 1428 0.4566 MLENMDDGEVSNGFTHQNPSSVASKNPSGLKGKRNLPGNPDPEAEVIALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTSSEPRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDVLAEETARVNAASSINNSLGGNIGYKIMGTSLGPNNMATHFSSIFKPISSTEDTSSNQTSRGLSLWMGQASQPHHETMANNGDLREIHHQLGSATSEGTIYGTGNPLVESSNPPPSSYQLSWVLGTKLSPSASQELTSTTASLPLGNNNIVKDAPSQLISVPSLYSSQHQSHQTSSANNMSATALLQKAAQIGATSTDPSFLGTLGLKCSSSQGQDGNKFCGIYGSGLVVTTSLGSDAENSACDLSHMHPAKRRRHVQNEDSGGGQTRDFLGVAGVNHLPPFINERMDFI* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2061 475 Gene3D Classic Zinc Finger 93 184 - -
Dod03g2061 475 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Dod03g2061 475 Gene3D Classic Zinc Finger 56 83 - -
Dod03g2061 475 SUPERFAMILY beta-beta-alpha zinc fingers 59 156 IPR036236 -
Dod03g2061 475 MobiDBLite consensus disorder prediction 10 28 - -
Dod03g2061 475 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 6 473 - -
Dod03g2061 475 MobiDBLite consensus disorder prediction 1 44 - -
Dod03g2061 475 PANTHER F-BOX ASSOCIATED PROTEIN 6 473 - -
Dod03g2061 475 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2061 Dod-Chr3 48325606 48328206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2061 24 458 IDZ Gene Family AT1G03840 51.639 1.04e-132 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod03g2061 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2061 K25870 - gmx:100778666 665.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2061 03 48325606 48328206 Dod03g2061 03 48325606 48328206 ECH