Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2049 ATGTTTGAGCCTTTGTTTTTCTTTCGTGGTGAGAGCGGGGGGACGTCAAGGAATGCATTGGAACAGAATCGTTGGGCAAACATGCCGCAGGAGCTGCTGAGAGAGGTGCTCGCGAGAGTGGAAGCGTCTGAGGCCACGTGGCCGCCGCGGAAGAGCGTTGTGGCTTGTGCTGGAGTGTGCCGCACTTGGAGGCGCATCGCAAATAACGTCGTCATGCCTCCCGCGCTTTCTTCCAAGATAACATTCCCCATGTCCCTCAAACAGCCTGGCCCGAGGGAGCGTCTATTCCAATGCTTCATTAAGCGCAACCGGGGCGCCCAAACATATCATTTGTTTCTCAGTTCAAATAATGGTGCACTTGTGGATGATGGGAAGTTCCTTCTGGCTGCACGCAAGTACAGACGCCCCACCTGCACGGATTATGTTATCTCCATAAATGCTGATGATATATCCAGGGGAAGCAAAGCCTGTGTTGGGAAACTGAGATCAAATTTTCTAGGAACAAAGTTCACAATCTATGATGATCAGTTGCCTCATACAAGAGGAGCAAAGATTATAAAAAGTCGCTCCAATCGGCTAATGAATCTGAAACGAGTTTCGCCCAGGGCCTCTACCGGCAGCTATCCTGTGGCCCATATCTCATATGAATTGAATGTGCTAAGCTCAAGGGGGCCCAGGAGAATGCATTGTGTGATGGATGCCATTCCTGCCTCTGCAATTGAACCAGGAGGGGTAGCCCCTGCACAGATAGACTCGTTAACTATTAACATAGACACGTTTCCTTCATTCCCAGTTTTTCCATCAAAATCAACTAGTGTGGTCAACTTCCTATCTGGACCTATGGGTGATAAAAAAGATGAAGTTCTAGTGTTGAAAAACAGGCTAGCTGCTTTGCCAAAAAACGGACCTGTTGGACCAGAAGATGGTAAGATCATCCTTCAATTTGGAAAAGTAGATAAGGATTTGTTTACAATGGATTACCGGTATCCTATCTCAGCATTCCAGGCATTTGCAATTTGTCTCAACAGCTTTGCCAAGATTGCTTGCGAATGA 1053 0.4748 MFEPLFFFRGESGGTSRNALEQNRWANMPQELLREVLARVEASEATWPPRKSVVACAGVCRTWRRIANNVVMPPALSSKITFPMSLKQPGPRERLFQCFIKRNRGAQTYHLFLSSNNGALVDDGKFLLAARKYRRPTCTDYVISINADDISRGSKACVGKLRSNFLGTKFTIYDDQLPHTRGAKIIKSRSNRLMNLKRVSPRASTGSYPVAHISYELNVLSSRGPRRMHCVMDAIPASAIEPGGVAPAQIDSLTINIDTFPSFPVFPSKSTSVVNFLSGPMGDKKDEVLVLKNRLAALPKNGPVGPEDGKIILQFGKVDKDLFTMDYRYPISAFQAFAICLNSFAKIACE* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2049 350 Pfam Tub family 306 345 IPR000007 -
Dod03g2049 350 Pfam Tub family 86 294 IPR000007 -
Dod03g2049 350 SUPERFAMILY F-box domain 17 73 IPR036047 GO:0005515
Dod03g2049 350 Pfam F-box domain 25 69 IPR001810 GO:0005515
Dod03g2049 350 SUPERFAMILY Tubby C-terminal domain-like 74 350 IPR025659 -
Dod03g2049 350 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 16 294 - -
Dod03g2049 350 PANTHER TUBBY-RELATED 16 294 - -
Dod03g2049 350 PANTHER TUBBY-RELATED 297 349 - -
Dod03g2049 350 Gene3D - 17 73 - -
Dod03g2049 350 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 297 349 - -
Dod03g2049 350 Gene3D Tubby Protein; Chain A 82 256 IPR025659 -
Dod03g2049 350 Gene3D Tubby Protein; Chain A 269 350 IPR025659 -
Dod03g2049 350 PRINTS Tubby superfamily signature 141 157 IPR000007 -
Dod03g2049 350 PRINTS Tubby superfamily signature 207 234 IPR000007 -
Dod03g2049 350 PRINTS Tubby superfamily signature 308 327 IPR000007 -
Dod03g2049 350 PRINTS Tubby superfamily signature 157 181 IPR000007 -
Dod03g2049 350 PRINTS Tubby superfamily signature 329 350 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2049 Dod-Chr3 47705001 47707490 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2049 18 350 TUB Transcription Factor Family AT2G47900 59.341 3.50e-144 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Dod03g2049 Tub 1.2e-52 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2049 K19600 - gmx:100778346 478.018