Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dod03g2049 | ATGTTTGAGCCTTTGTTTTTCTTTCGTGGTGAGAGCGGGGGGACGTCAAGGAATGCATTGGAACAGAATCGTTGGGCAAACATGCCGCAGGAGCTGCTGAGAGAGGTGCTCGCGAGAGTGGAAGCGTCTGAGGCCACGTGGCCGCCGCGGAAGAGCGTTGTGGCTTGTGCTGGAGTGTGCCGCACTTGGAGGCGCATCGCAAATAACGTCGTCATGCCTCCCGCGCTTTCTTCCAAGATAACATTCCCCATGTCCCTCAAACAGCCTGGCCCGAGGGAGCGTCTATTCCAATGCTTCATTAAGCGCAACCGGGGCGCCCAAACATATCATTTGTTTCTCAGTTCAAATAATGGTGCACTTGTGGATGATGGGAAGTTCCTTCTGGCTGCACGCAAGTACAGACGCCCCACCTGCACGGATTATGTTATCTCCATAAATGCTGATGATATATCCAGGGGAAGCAAAGCCTGTGTTGGGAAACTGAGATCAAATTTTCTAGGAACAAAGTTCACAATCTATGATGATCAGTTGCCTCATACAAGAGGAGCAAAGATTATAAAAAGTCGCTCCAATCGGCTAATGAATCTGAAACGAGTTTCGCCCAGGGCCTCTACCGGCAGCTATCCTGTGGCCCATATCTCATATGAATTGAATGTGCTAAGCTCAAGGGGGCCCAGGAGAATGCATTGTGTGATGGATGCCATTCCTGCCTCTGCAATTGAACCAGGAGGGGTAGCCCCTGCACAGATAGACTCGTTAACTATTAACATAGACACGTTTCCTTCATTCCCAGTTTTTCCATCAAAATCAACTAGTGTGGTCAACTTCCTATCTGGACCTATGGGTGATAAAAAAGATGAAGTTCTAGTGTTGAAAAACAGGCTAGCTGCTTTGCCAAAAAACGGACCTGTTGGACCAGAAGATGGTAAGATCATCCTTCAATTTGGAAAAGTAGATAAGGATTTGTTTACAATGGATTACCGGTATCCTATCTCAGCATTCCAGGCATTTGCAATTTGTCTCAACAGCTTTGCCAAGATTGCTTGCGAATGA | 1053 | 0.4748 | MFEPLFFFRGESGGTSRNALEQNRWANMPQELLREVLARVEASEATWPPRKSVVACAGVCRTWRRIANNVVMPPALSSKITFPMSLKQPGPRERLFQCFIKRNRGAQTYHLFLSSNNGALVDDGKFLLAARKYRRPTCTDYVISINADDISRGSKACVGKLRSNFLGTKFTIYDDQLPHTRGAKIIKSRSNRLMNLKRVSPRASTGSYPVAHISYELNVLSSRGPRRMHCVMDAIPASAIEPGGVAPAQIDSLTINIDTFPSFPVFPSKSTSVVNFLSGPMGDKKDEVLVLKNRLAALPKNGPVGPEDGKIILQFGKVDKDLFTMDYRYPISAFQAFAICLNSFAKIACE* | 351 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dod03g2049 | 350 | Pfam | Tub family | 306 | 345 | IPR000007 | - | |
Dod03g2049 | 350 | Pfam | Tub family | 86 | 294 | IPR000007 | - | |
Dod03g2049 | 350 | SUPERFAMILY | F-box domain | 17 | 73 | IPR036047 | GO:0005515 | |
Dod03g2049 | 350 | Pfam | F-box domain | 25 | 69 | IPR001810 | GO:0005515 | |
Dod03g2049 | 350 | SUPERFAMILY | Tubby C-terminal domain-like | 74 | 350 | IPR025659 | - | |
Dod03g2049 | 350 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 9 | 16 | 294 | - | - | |
Dod03g2049 | 350 | PANTHER | TUBBY-RELATED | 16 | 294 | - | - | |
Dod03g2049 | 350 | PANTHER | TUBBY-RELATED | 297 | 349 | - | - | |
Dod03g2049 | 350 | Gene3D | - | 17 | 73 | - | - | |
Dod03g2049 | 350 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 9 | 297 | 349 | - | - | |
Dod03g2049 | 350 | Gene3D | Tubby Protein; Chain A | 82 | 256 | IPR025659 | - | |
Dod03g2049 | 350 | Gene3D | Tubby Protein; Chain A | 269 | 350 | IPR025659 | - | |
Dod03g2049 | 350 | PRINTS | Tubby superfamily signature | 141 | 157 | IPR000007 | - | |
Dod03g2049 | 350 | PRINTS | Tubby superfamily signature | 207 | 234 | IPR000007 | - | |
Dod03g2049 | 350 | PRINTS | Tubby superfamily signature | 308 | 327 | IPR000007 | - | |
Dod03g2049 | 350 | PRINTS | Tubby superfamily signature | 157 | 181 | IPR000007 | - | |
Dod03g2049 | 350 | PRINTS | Tubby superfamily signature | 329 | 350 | IPR000007 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dod03g2049 | Dod-Chr3 | 47705001 | 47707490 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Dod03g2049 | 18 | 350 | TUB Transcription Factor Family | AT2G47900 | 59.341 | 3.50e-144 | 412 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | TUB | Dod03g2049 | Tub | 1.2e-52 | CL0395 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Dod03g2049 | K19600 | - | gmx:100778346 | 478.018 |