Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1982 ATGAGCAGCAGCAACATGAACAATTTAACGCCTCTGCCAGGGGCTCGGAGAACTGCTGATAGAGCCTATGATGCTCGCTCTTTTAACAATAGTGATCCCCATGCGGTGCCTGTGTTTTACAGATCTCGCTCTACTCATACCACTGATAACAGGAGTTCAGGTGTGCAAGAACCACGGAGGCTGAGGGAAGTCAGAAATCCAGCAGGAGTCTACAGTATACCAAATTCTCATGCAGAACCACATAGCAGACTAGTTCATATTCACAGAGGCGACACCGGACGGGGTTATAACCCCAGGATCAGAGAGATTTTCTGGCAGTCATCACCAAGAACCGCATTCCAAACAAGCGAAGAAGCTCCTCAACCGGTAGAAAATTCCAGATCAGCAGCATTGAGCAAGCTTAAGAAAGAAGTCTATAACCCCACACCAAAGAGTTTAGCCTCACCAAAGAGGCCAGCCAGCAGAGTGAGCTCACATAACAGAGATAATCATGCTGTAAATGGTTCTGAAGAGAGGGAGAAAGAGAATGATGAAGAAGGTAAGAGGTGTGCTATTTGCTTGGAAGATTTTAAGCCCAAAGAGGAAGTGATGCTCACTCCATGCAAGCACATGTTTCATGAGCACTGCATAGTACCATGGTTAACAAGCAATGGACAGTGCCCAGTTTGTAGGTTTGTGATCTCTGAGAGACTGAGGGAAAACCCTTCTTTCTTCATCAGCACCAATAACATTGCCACTTTGGAGCCCATTGGCGTGATTGCTAGTGAGCTTTTTACAATTTTGAGGGCCATGGAAGAACCATTTCAGTTCGGCAATGGGATTCACTAG 828 0.4614 MSSSNMNNLTPLPGARRTADRAYDARSFNNSDPHAVPVFYRSRSTHTTDNRSSGVQEPRRLREVRNPAGVYSIPNSHAEPHSRLVHIHRGDTGRGYNPRIREIFWQSSPRTAFQTSEEAPQPVENSRSAALSKLKKEVYNPTPKSLASPKRPASRVSSHNRDNHAVNGSEEREKENDEEGKRCAICLEDFKPKEEVMLTPCKHMFHEHCIVPWLTSNGQCPVCRFVISERLRENPSFFISTNNIATLEPIGVIASELFTILRAMEEPFQFGNGIH* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1982 275 MobiDBLite consensus disorder prediction 137 178 - -
Dod03g1982 275 ProSiteProfiles Zinc finger RING-type profile. 183 224 IPR001841 -
Dod03g1982 275 MobiDBLite consensus disorder prediction 1 58 - -
Dod03g1982 275 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 4 271 - -
Dod03g1982 275 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 4 271 - -
Dod03g1982 275 MobiDBLite consensus disorder prediction 164 178 - -
Dod03g1982 275 SMART ring_2 183 223 IPR001841 -
Dod03g1982 275 CDD RING-H2_PA-TM-RING 183 224 - -
Dod03g1982 275 Pfam Ring finger domain 182 224 IPR001841 -
Dod03g1982 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 238 IPR013083 -
Dod03g1982 275 SUPERFAMILY RING/U-box 174 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1982 Dod-Chr3 45057053 45059231 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1982 125 272 C3H Transcription Factor Family AT3G58720 44.444 2.67e-37 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1982 - K11982 aip:107630161 298.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1982 03 45057053 45059231 Dod03g1982 03 45057053 45059231 ECH