Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dod03g1966 | ATGGGGAAGAATAGCATGTTCCGCTATGCAGATGGCGTGGACAAGTTGTTGATGTTCTTTGGGACCATTGGAAGCCTTGGAGATGGGCTGCAGAACCCTCTGATGATGTACATTCTTAGTGATGTGATCAACGCCTATGGAGACCAGAATAGCAAGTTGACAAAGCATGATGTGAACAAGTATGCATTGAGGCTTTTATGTGTCGCAATTGGAGTTGGACTTTCAGCTTTTATAGAAGGAATGTGCTGGACAAGAACTGCTGAGAGACAGGCTTCCAGAATGAGAATGGAATACCTAAAATCAGTCCTAAGGCAAGAAGTTGGTTTCTTTGACACACAGACTGCTGGTTCTTCAACAACCTACCAAGTTGTCTCACTCATCTCCTCTGATGCCAATACAATTCAAGTTGCCATGTGTGAGAAGATACCTGACTGCTTCACTTACATGTCAACATTCTTATTTTGCCACATCTTTGCATTTGTGCTTTCATGGAGACTTGCACTGGCAGCCATACCACTCTCTGTCATGTTCATCGTTCCGGCACTTATATTTGGGAAGATAATGTTGGATGTCACAATGAAAATGATTGAGTCTTATGGGGTTGCTGGTGGGATTGCAGAACAAGCAATATCTTCAATAAGAACTGTTTATTCATATGTTGGGGAGAATCAAACACTAAGCAAATTTAGCAGTGCACTTCAGAAAACTATGGAATTGGGAATAAAGCAAGGTTTTGCAAAGGGGTTGATGTTAGGAAGCATGGGAGTTATCTATATAAGTTGGGGTTTTCAGGCTTGGGTTGGAAGCATTCTGATCACTGAAAAAGGAGAAAAGGGTGGCCATGTATTTGTAGCAGGCTTCAATATCCTAATGGGAGGACTGAGCATTTTGAGTGCACTTCCAAATTTAACTGCCATCACAGAAGCAACTACTGCTGTGACTCGTCTTTTTGAAATGATTGATAGGGTGCCAACTATAGATTCTGAAGAGAAAAAGGGAAAGGCCTTATCATACGTGAGAGGAGAAATTGAATTTAAGGACATCTACTTCTGTTATCCATCTAGGCCAGATACACCAATCTTGCAAGGACTCAATCTAACTGTCCCAGCAGGCAAGAGAGTAGGCCTTGTGGGGGGTAGTGGTTCAGGCAAATCCACTATCATTGCACTGCTTGAGAGGTTTTATGACCCTACTGAGGGAGAAATACTCTTGGATGGCCACAAGATTAGTAGACTTCAATTGAAATGGTTGAGATCTCAGCTTGGCCTAGTAAATCAAGAACCTATTCTTTTTGCCACATCCATAAAAGAGAATATATTGTTTGGGAAAGAAGGGGCTTCAATGGACAATGTCATAAGTGCAGCTAAAGCCGCAAATGCACATGATTTCATCGCCCAGTTGCCAGATGGTTATGAAACTCAAGTTGGACAGTTTGGATTTCAGTTGTCTGGAGGGCAGAAGCAGCGCATCGCCATAGCAAGAGCTTTACTTAGAGATCCAAAGGTTCTCCTGCTTGATGAAGCTACCAGTGCACTGGATACACAATCTGAAAGGGTGGTGCAGGCAGCAATTGATCAAGCTTCGAAAGGAAGGACAACAATCATCATTGCTCACCGCCTTTCCACGATACAAACAGCCAACCTTATTGTAGTCCTTCAAGCAGGGAGAGTGATTGAATCAGGAACTCATAATGAGCTCATGGGAATGAATGGTGGACAAGGTGGGGAGTATGCTCGTATGGTAGATTTGCAGCAAGTAACAACTCAGAATGATGAATCAAAACCTTCCAATCCTCAAATGGAAGGAAGGAGCTCCCATAGGGTGAGCACTCCCCAAAGTCCATCAGTAAGTTTCAGATCAAGCACATATGGCAGTCCAATGTTGCATCCCTTCAGCCAGGGATTTTCCATGGGCACTCCTTACTCCTACTCCATCCAATATGACCAAGATGATGATTGTCATGAAGGTAACTTGAAAAGATCACACTATCCAGCTCCTTCGCAATGGAGTTTGATGAAAATGAATGCACCTGAGTGGGGAAGAGCAGTTCTTGGAATCTTGGGAGCATTAGGCTCAGGAGCGGTGCAACCAATAAATGCATATTGTGTGGGATTACTAATATCAGATTACTTTGACATTGATAAGATCAAGTCTAAAACTAGAGGCCTGGCACTCACTTTCTTAGGAATTGGTGTTTTTAACTTCTTCACAAGTATTCTCCAACACTATAATTTTGCAGTTATGGGAGAGAGCTTGACTAAAAGAATAAGAGAGAAACTACTGGAGAAGTTGATGACTTTTGAGATAGGATGGTTTGATGATGAAGAGAACACAAGTGCAGCCATCTGTGCACGATTATCATCTGAGGCCAACTTGGTCCGCTCCCTTGTTGGTGATCGGATGTCATTGTTGGCCCAAGCAATTTTTGGTTCTGTCTTTGCTTACACTCTAGGACTAGTGCTCACATGGAGGCTTTCCCTTGTGATGATTGCAGTGCAGCCAATAGTCATTGGAAGCTTTTATTTGAGAAGTGTCTTGATGAAGAGCATGGCAGAAAAAGCGCGAAAAGCACAAAGGGAAGGGAGCCAACTTGCAAGTGAAGCTGTCATAAACCATAGAACCATATCTGCCTTCAGTTCTCAGAAAAGAATGTTGGCTCTCTTCAAATCCACAATGGTAGGCCCTAAAAAGGAGAGTATTAGGCAGTCATGGATTTCAGGATTTGGTCTTTTCAGCTCCCAATTTTTCAACACTGCATCAACAGCATTAGCCTACTGGTATGGTGGGGGGCTCCTGGTAGATGGACACATTAAACCAAAGCATCTGTTCCAAGCATTTTTTATACTTCTCTTCACTGCATACATCATTGCAGAAGCTGGAAGCATGACTTCTGACATATCTAAAGGAAGCGGCGCGGTTGGATCAGTTTTTGCTATCCTGGACAGGAAAAGTGAGATTGATCCTGAGGCCTCATGGGGAGGAGCCAAAAGAAGGAAGATAAGGGGTAGAGTGGAGCTTAAGAGTGTTTTCTTTGCATATCCAACTAGGCCTGATCAGATGATATTCAAGGGTCTGTCCCTTAAAGTTGATTCTGGGAGAACAGTGGCACTGCTGGGGCATAGTGGTAGTGGTAAATCCACTATTATTGGTCTTATTGAAAGGTTTTATGATCCTCTGAAGGGATTGGTATGCATAGATGAACAGGACATTAAGTCCTACAATTTGAGAATGCTGAGGTCACAAATTGCATTGGTCAGTCAGGAGCCAACTCTTTTTGCTGGAACCATCCGAGAAAATATTGCCTATGGTAAAGAAGAGGCCACTGAATCTGAGATAAGAAGGGCTGCAGCTCTTGCTAATGCTCATGAATTCATAAGTGGAATGAAAGATGGGTATGAGACATACTGTGGAGAAAGAGGAGTTCAACTATCAGGAGGTCAGAAACAAAGAGTAGCCTTAGCAAGGGCCATACTGAAGAATCCTGCAATTCTGCTTCTGGATGAGGCTACCAGTGCACTGGACAGTGTGTCAGAGAACTTGGTCCAAGAAGCACTTGAGAAGATGATGGTTGGAAGAACATGCATAGTTGTGGCACATAGGCTGTCTACAATACAGAGATCCAACTCCATTGCTGTGATTAAGAATGGGAAAGTTGTGGAGCAAGGTTCACATAATGAATTAATTTCCCTTCATGGAGCATACTATTCTCTTACTAAACTTCAAAGTGGAAGCTCCACTAGGTAA | 3744 | 0.4298 | MGKNSMFRYADGVDKLLMFFGTIGSLGDGLQNPLMMYILSDVINAYGDQNSKLTKHDVNKYALRLLCVAIGVGLSAFIEGMCWTRTAERQASRMRMEYLKSVLRQEVGFFDTQTAGSSTTYQVVSLISSDANTIQVAMCEKIPDCFTYMSTFLFCHIFAFVLSWRLALAAIPLSVMFIVPALIFGKIMLDVTMKMIESYGVAGGIAEQAISSIRTVYSYVGENQTLSKFSSALQKTMELGIKQGFAKGLMLGSMGVIYISWGFQAWVGSILITEKGEKGGHVFVAGFNILMGGLSILSALPNLTAITEATTAVTRLFEMIDRVPTIDSEEKKGKALSYVRGEIEFKDIYFCYPSRPDTPILQGLNLTVPAGKRVGLVGGSGSGKSTIIALLERFYDPTEGEILLDGHKISRLQLKWLRSQLGLVNQEPILFATSIKENILFGKEGASMDNVISAAKAANAHDFIAQLPDGYETQVGQFGFQLSGGQKQRIAIARALLRDPKVLLLDEATSALDTQSERVVQAAIDQASKGRTTIIIAHRLSTIQTANLIVVLQAGRVIESGTHNELMGMNGGQGGEYARMVDLQQVTTQNDESKPSNPQMEGRSSHRVSTPQSPSVSFRSSTYGSPMLHPFSQGFSMGTPYSYSIQYDQDDDCHEGNLKRSHYPAPSQWSLMKMNAPEWGRAVLGILGALGSGAVQPINAYCVGLLISDYFDIDKIKSKTRGLALTFLGIGVFNFFTSILQHYNFAVMGESLTKRIREKLLEKLMTFEIGWFDDEENTSAAICARLSSEANLVRSLVGDRMSLLAQAIFGSVFAYTLGLVLTWRLSLVMIAVQPIVIGSFYLRSVLMKSMAEKARKAQREGSQLASEAVINHRTISAFSSQKRMLALFKSTMVGPKKESIRQSWISGFGLFSSQFFNTASTALAYWYGGGLLVDGHIKPKHLFQAFFILLFTAYIIAEAGSMTSDISKGSGAVGSVFAILDRKSEIDPEASWGGAKRRKIRGRVELKSVFFAYPTRPDQMIFKGLSLKVDSGRTVALLGHSGSGKSTIIGLIERFYDPLKGLVCIDEQDIKSYNLRMLRSQIALVSQEPTLFAGTIRENIAYGKEEATESEIRRAAALANAHEFISGMKDGYETYCGERGVQLSGGQKQRVALARAILKNPAILLLDEATSALDSVSENLVQEALEKMMVGRTCIVVAHRLSTIQRSNSIAVIKNGKVVEQGSHNELISLHGAYYSLTKLQSGSSTR* | 1248 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dod03g1966 | 1247 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 19 | 308 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Dod03g1966 | 1247 | ProSitePatterns | ABC transporters family signature. | 482 | 496 | IPR017871 | GO:0005524 | |
Dod03g1966 | 1247 | SUPERFAMILY | ABC transporter transmembrane region | 6 | 327 | IPR036640 | GO:0005524|GO:0016021 | |
Dod03g1966 | 1247 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 672 | 986 | - | - | |
Dod03g1966 | 1247 | Gene3D | ABC transporter type 1, transmembrane domain | 68 | 910 | IPR036640 | GO:0005524|GO:0016021 | |
Dod03g1966 | 1247 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 683 | 968 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Dod03g1966 | 1247 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 998 | 1241 | IPR027417 | - | |
Dod03g1966 | 1247 | CDD | ABC_MTABC3_MDL1_MDL2 | 343 | 584 | - | - | |
Dod03g1966 | 1247 | SMART | AAA_5 | 1031 | 1217 | IPR003593 | - | |
Dod03g1966 | 1247 | SMART | AAA_5 | 370 | 562 | IPR003593 | - | |
Dod03g1966 | 1247 | MobiDBLite | consensus disorder prediction | 586 | 620 | - | - | |
Dod03g1966 | 1247 | PANTHER | ABC TRANSPORTER B FAMILY PROTEIN | 10 | 1242 | - | - | |
Dod03g1966 | 1247 | Pfam | ABC transporter | 361 | 510 | IPR003439 | GO:0005524 | |
Dod03g1966 | 1247 | CDD | ABC_MTABC3_MDL1_MDL2 | 1004 | 1241 | - | - | |
Dod03g1966 | 1247 | ProSitePatterns | ABC transporters family signature. | 1143 | 1157 | IPR017871 | GO:0005524 | |
Dod03g1966 | 1247 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1004 | 1240 | IPR003439 | GO:0005524 | |
Dod03g1966 | 1247 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 18 | 316 | - | - | |
Dod03g1966 | 1247 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 343 | 579 | IPR003439 | GO:0005524 | |
Dod03g1966 | 1247 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 334 | 584 | IPR027417 | - | |
Dod03g1966 | 1247 | Gene3D | - | 994 | 1246 | IPR027417 | - | |
Dod03g1966 | 1247 | Gene3D | - | 341 | 597 | IPR027417 | - | |
Dod03g1966 | 1247 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY B | 10 | 1242 | IPR039421 | - | |
Dod03g1966 | 1247 | Pfam | ABC transporter | 1023 | 1171 | IPR003439 | GO:0005524 | |
Dod03g1966 | 1247 | SUPERFAMILY | ABC transporter transmembrane region | 671 | 987 | IPR036640 | GO:0005524|GO:0016021 | |
Dod03g1966 | 1247 | Pfam | ABC transporter transmembrane region | 684 | 953 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Dod03g1966 | 1247 | Pfam | ABC transporter transmembrane region | 18 | 293 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dod03g1966 | Dod-Chr3 | 44180968 | 44187428 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Dod03g1966 | 6 | 1247 | Calmodulin-binding Proteins | AT2G36910 | 43.794 | 0.0 | 990 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Dod03g1966 | K05658 | - | gmx:100788127 | 2155.18 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Dod03g1966 | 03 | 44180968 | 44187428 | Dod03g1966 | 03 | 44180968 | 44187428 | ECH |