Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1966 ATGGGGAAGAATAGCATGTTCCGCTATGCAGATGGCGTGGACAAGTTGTTGATGTTCTTTGGGACCATTGGAAGCCTTGGAGATGGGCTGCAGAACCCTCTGATGATGTACATTCTTAGTGATGTGATCAACGCCTATGGAGACCAGAATAGCAAGTTGACAAAGCATGATGTGAACAAGTATGCATTGAGGCTTTTATGTGTCGCAATTGGAGTTGGACTTTCAGCTTTTATAGAAGGAATGTGCTGGACAAGAACTGCTGAGAGACAGGCTTCCAGAATGAGAATGGAATACCTAAAATCAGTCCTAAGGCAAGAAGTTGGTTTCTTTGACACACAGACTGCTGGTTCTTCAACAACCTACCAAGTTGTCTCACTCATCTCCTCTGATGCCAATACAATTCAAGTTGCCATGTGTGAGAAGATACCTGACTGCTTCACTTACATGTCAACATTCTTATTTTGCCACATCTTTGCATTTGTGCTTTCATGGAGACTTGCACTGGCAGCCATACCACTCTCTGTCATGTTCATCGTTCCGGCACTTATATTTGGGAAGATAATGTTGGATGTCACAATGAAAATGATTGAGTCTTATGGGGTTGCTGGTGGGATTGCAGAACAAGCAATATCTTCAATAAGAACTGTTTATTCATATGTTGGGGAGAATCAAACACTAAGCAAATTTAGCAGTGCACTTCAGAAAACTATGGAATTGGGAATAAAGCAAGGTTTTGCAAAGGGGTTGATGTTAGGAAGCATGGGAGTTATCTATATAAGTTGGGGTTTTCAGGCTTGGGTTGGAAGCATTCTGATCACTGAAAAAGGAGAAAAGGGTGGCCATGTATTTGTAGCAGGCTTCAATATCCTAATGGGAGGACTGAGCATTTTGAGTGCACTTCCAAATTTAACTGCCATCACAGAAGCAACTACTGCTGTGACTCGTCTTTTTGAAATGATTGATAGGGTGCCAACTATAGATTCTGAAGAGAAAAAGGGAAAGGCCTTATCATACGTGAGAGGAGAAATTGAATTTAAGGACATCTACTTCTGTTATCCATCTAGGCCAGATACACCAATCTTGCAAGGACTCAATCTAACTGTCCCAGCAGGCAAGAGAGTAGGCCTTGTGGGGGGTAGTGGTTCAGGCAAATCCACTATCATTGCACTGCTTGAGAGGTTTTATGACCCTACTGAGGGAGAAATACTCTTGGATGGCCACAAGATTAGTAGACTTCAATTGAAATGGTTGAGATCTCAGCTTGGCCTAGTAAATCAAGAACCTATTCTTTTTGCCACATCCATAAAAGAGAATATATTGTTTGGGAAAGAAGGGGCTTCAATGGACAATGTCATAAGTGCAGCTAAAGCCGCAAATGCACATGATTTCATCGCCCAGTTGCCAGATGGTTATGAAACTCAAGTTGGACAGTTTGGATTTCAGTTGTCTGGAGGGCAGAAGCAGCGCATCGCCATAGCAAGAGCTTTACTTAGAGATCCAAAGGTTCTCCTGCTTGATGAAGCTACCAGTGCACTGGATACACAATCTGAAAGGGTGGTGCAGGCAGCAATTGATCAAGCTTCGAAAGGAAGGACAACAATCATCATTGCTCACCGCCTTTCCACGATACAAACAGCCAACCTTATTGTAGTCCTTCAAGCAGGGAGAGTGATTGAATCAGGAACTCATAATGAGCTCATGGGAATGAATGGTGGACAAGGTGGGGAGTATGCTCGTATGGTAGATTTGCAGCAAGTAACAACTCAGAATGATGAATCAAAACCTTCCAATCCTCAAATGGAAGGAAGGAGCTCCCATAGGGTGAGCACTCCCCAAAGTCCATCAGTAAGTTTCAGATCAAGCACATATGGCAGTCCAATGTTGCATCCCTTCAGCCAGGGATTTTCCATGGGCACTCCTTACTCCTACTCCATCCAATATGACCAAGATGATGATTGTCATGAAGGTAACTTGAAAAGATCACACTATCCAGCTCCTTCGCAATGGAGTTTGATGAAAATGAATGCACCTGAGTGGGGAAGAGCAGTTCTTGGAATCTTGGGAGCATTAGGCTCAGGAGCGGTGCAACCAATAAATGCATATTGTGTGGGATTACTAATATCAGATTACTTTGACATTGATAAGATCAAGTCTAAAACTAGAGGCCTGGCACTCACTTTCTTAGGAATTGGTGTTTTTAACTTCTTCACAAGTATTCTCCAACACTATAATTTTGCAGTTATGGGAGAGAGCTTGACTAAAAGAATAAGAGAGAAACTACTGGAGAAGTTGATGACTTTTGAGATAGGATGGTTTGATGATGAAGAGAACACAAGTGCAGCCATCTGTGCACGATTATCATCTGAGGCCAACTTGGTCCGCTCCCTTGTTGGTGATCGGATGTCATTGTTGGCCCAAGCAATTTTTGGTTCTGTCTTTGCTTACACTCTAGGACTAGTGCTCACATGGAGGCTTTCCCTTGTGATGATTGCAGTGCAGCCAATAGTCATTGGAAGCTTTTATTTGAGAAGTGTCTTGATGAAGAGCATGGCAGAAAAAGCGCGAAAAGCACAAAGGGAAGGGAGCCAACTTGCAAGTGAAGCTGTCATAAACCATAGAACCATATCTGCCTTCAGTTCTCAGAAAAGAATGTTGGCTCTCTTCAAATCCACAATGGTAGGCCCTAAAAAGGAGAGTATTAGGCAGTCATGGATTTCAGGATTTGGTCTTTTCAGCTCCCAATTTTTCAACACTGCATCAACAGCATTAGCCTACTGGTATGGTGGGGGGCTCCTGGTAGATGGACACATTAAACCAAAGCATCTGTTCCAAGCATTTTTTATACTTCTCTTCACTGCATACATCATTGCAGAAGCTGGAAGCATGACTTCTGACATATCTAAAGGAAGCGGCGCGGTTGGATCAGTTTTTGCTATCCTGGACAGGAAAAGTGAGATTGATCCTGAGGCCTCATGGGGAGGAGCCAAAAGAAGGAAGATAAGGGGTAGAGTGGAGCTTAAGAGTGTTTTCTTTGCATATCCAACTAGGCCTGATCAGATGATATTCAAGGGTCTGTCCCTTAAAGTTGATTCTGGGAGAACAGTGGCACTGCTGGGGCATAGTGGTAGTGGTAAATCCACTATTATTGGTCTTATTGAAAGGTTTTATGATCCTCTGAAGGGATTGGTATGCATAGATGAACAGGACATTAAGTCCTACAATTTGAGAATGCTGAGGTCACAAATTGCATTGGTCAGTCAGGAGCCAACTCTTTTTGCTGGAACCATCCGAGAAAATATTGCCTATGGTAAAGAAGAGGCCACTGAATCTGAGATAAGAAGGGCTGCAGCTCTTGCTAATGCTCATGAATTCATAAGTGGAATGAAAGATGGGTATGAGACATACTGTGGAGAAAGAGGAGTTCAACTATCAGGAGGTCAGAAACAAAGAGTAGCCTTAGCAAGGGCCATACTGAAGAATCCTGCAATTCTGCTTCTGGATGAGGCTACCAGTGCACTGGACAGTGTGTCAGAGAACTTGGTCCAAGAAGCACTTGAGAAGATGATGGTTGGAAGAACATGCATAGTTGTGGCACATAGGCTGTCTACAATACAGAGATCCAACTCCATTGCTGTGATTAAGAATGGGAAAGTTGTGGAGCAAGGTTCACATAATGAATTAATTTCCCTTCATGGAGCATACTATTCTCTTACTAAACTTCAAAGTGGAAGCTCCACTAGGTAA 3744 0.4298 MGKNSMFRYADGVDKLLMFFGTIGSLGDGLQNPLMMYILSDVINAYGDQNSKLTKHDVNKYALRLLCVAIGVGLSAFIEGMCWTRTAERQASRMRMEYLKSVLRQEVGFFDTQTAGSSTTYQVVSLISSDANTIQVAMCEKIPDCFTYMSTFLFCHIFAFVLSWRLALAAIPLSVMFIVPALIFGKIMLDVTMKMIESYGVAGGIAEQAISSIRTVYSYVGENQTLSKFSSALQKTMELGIKQGFAKGLMLGSMGVIYISWGFQAWVGSILITEKGEKGGHVFVAGFNILMGGLSILSALPNLTAITEATTAVTRLFEMIDRVPTIDSEEKKGKALSYVRGEIEFKDIYFCYPSRPDTPILQGLNLTVPAGKRVGLVGGSGSGKSTIIALLERFYDPTEGEILLDGHKISRLQLKWLRSQLGLVNQEPILFATSIKENILFGKEGASMDNVISAAKAANAHDFIAQLPDGYETQVGQFGFQLSGGQKQRIAIARALLRDPKVLLLDEATSALDTQSERVVQAAIDQASKGRTTIIIAHRLSTIQTANLIVVLQAGRVIESGTHNELMGMNGGQGGEYARMVDLQQVTTQNDESKPSNPQMEGRSSHRVSTPQSPSVSFRSSTYGSPMLHPFSQGFSMGTPYSYSIQYDQDDDCHEGNLKRSHYPAPSQWSLMKMNAPEWGRAVLGILGALGSGAVQPINAYCVGLLISDYFDIDKIKSKTRGLALTFLGIGVFNFFTSILQHYNFAVMGESLTKRIREKLLEKLMTFEIGWFDDEENTSAAICARLSSEANLVRSLVGDRMSLLAQAIFGSVFAYTLGLVLTWRLSLVMIAVQPIVIGSFYLRSVLMKSMAEKARKAQREGSQLASEAVINHRTISAFSSQKRMLALFKSTMVGPKKESIRQSWISGFGLFSSQFFNTASTALAYWYGGGLLVDGHIKPKHLFQAFFILLFTAYIIAEAGSMTSDISKGSGAVGSVFAILDRKSEIDPEASWGGAKRRKIRGRVELKSVFFAYPTRPDQMIFKGLSLKVDSGRTVALLGHSGSGKSTIIGLIERFYDPLKGLVCIDEQDIKSYNLRMLRSQIALVSQEPTLFAGTIRENIAYGKEEATESEIRRAAALANAHEFISGMKDGYETYCGERGVQLSGGQKQRVALARAILKNPAILLLDEATSALDSVSENLVQEALEKMMVGRTCIVVAHRLSTIQRSNSIAVIKNGKVVEQGSHNELISLHGAYYSLTKLQSGSSTR* 1248
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1966 1247 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 19 308 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod03g1966 1247 ProSitePatterns ABC transporters family signature. 482 496 IPR017871 GO:0005524
Dod03g1966 1247 SUPERFAMILY ABC transporter transmembrane region 6 327 IPR036640 GO:0005524|GO:0016021
Dod03g1966 1247 CDD ABC_6TM_Pgp_ABCB1_D2_like 672 986 - -
Dod03g1966 1247 Gene3D ABC transporter type 1, transmembrane domain 68 910 IPR036640 GO:0005524|GO:0016021
Dod03g1966 1247 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 683 968 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod03g1966 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 998 1241 IPR027417 -
Dod03g1966 1247 CDD ABC_MTABC3_MDL1_MDL2 343 584 - -
Dod03g1966 1247 SMART AAA_5 1031 1217 IPR003593 -
Dod03g1966 1247 SMART AAA_5 370 562 IPR003593 -
Dod03g1966 1247 MobiDBLite consensus disorder prediction 586 620 - -
Dod03g1966 1247 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 10 1242 - -
Dod03g1966 1247 Pfam ABC transporter 361 510 IPR003439 GO:0005524
Dod03g1966 1247 CDD ABC_MTABC3_MDL1_MDL2 1004 1241 - -
Dod03g1966 1247 ProSitePatterns ABC transporters family signature. 1143 1157 IPR017871 GO:0005524
Dod03g1966 1247 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1004 1240 IPR003439 GO:0005524
Dod03g1966 1247 CDD ABC_6TM_Pgp_ABCB1_D1_like 18 316 - -
Dod03g1966 1247 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 343 579 IPR003439 GO:0005524
Dod03g1966 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 584 IPR027417 -
Dod03g1966 1247 Gene3D - 994 1246 IPR027417 -
Dod03g1966 1247 Gene3D - 341 597 IPR027417 -
Dod03g1966 1247 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 10 1242 IPR039421 -
Dod03g1966 1247 Pfam ABC transporter 1023 1171 IPR003439 GO:0005524
Dod03g1966 1247 SUPERFAMILY ABC transporter transmembrane region 671 987 IPR036640 GO:0005524|GO:0016021
Dod03g1966 1247 Pfam ABC transporter transmembrane region 684 953 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod03g1966 1247 Pfam ABC transporter transmembrane region 18 293 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dod03g1966 Dod-Chr3 44180968 44187428 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1966 6 1247 Calmodulin-binding Proteins AT2G36910 43.794 0.0 990
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1966 K05658 - gmx:100788127 2155.18
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1966 03 44180968 44187428 Dod03g1966 03 44180968 44187428 ECH