Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1949 ATGGTTTCCCGGGAAAGCCCCAACTGGCTTTTCGATTACGCCTTGATTGACGATATTCCCGTCCCCGATGCCTCCTTTGCTGTCCCTTCCTCTGGCTTCAATTGGCCCCAAAACGCCTTGAACGCTTCTTCCAATGTCGGTGTTGAAATGGATGGCTCATTGGGGGACTCTGATGGTATCAAAGAATCTGGTTCAAAAAAGAGGGGTAGATCTGAGTCATGTGCTGCTTCTAGCTCCAAGGCTTGTAGGGAGAAGTTGCGGAGGGATAAGCTTAATGACAAGTTTGTTGAATTAGGCTCCATTTTGGAGCCTGGAAGGCCTCCCAAAACAGATAAGGCTGCTATCCTGATTGATGCTGTGCGAATGGTGACACAGCTACGTGGTGAAGCCCAGAAGTTGAAAGACTCTAACCTGGGTCTGCAAGAAAAGATTAAAGAGCTGAAGGCTGAGAAGAATGAACTTCGTGACGAGAAACAGAGACTCAAGGCCGAGAAAGAAAAGTTGGAGCAGCAGCTGAAGTCTGTGAATGCACCGCCTAGTTTCTTGCCTCCCCCTGCTGGAATCCCCGCTGCATTTGCTGCACAAGGTCAAGCCCCTGGCAACAAGTTGGTACCTATTATTAGTTATCCAGGAGTCGCGATGTGGCAATTCATGCCGCCTGCTGCGGTGGATACGTCACAGGATCATGTACTCCGTCCACCAGTTGCCTAA 711 0.4979 MVSRESPNWLFDYALIDDIPVPDASFAVPSSGFNWPQNALNASSNVGVEMDGSLGDSDGIKESGSKKRGRSESCAASSSKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKLKDSNLGLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQLKSVNAPPSFLPPPAGIPAAFAAQGQAPGNKLVPIISYPGVAMWQFMPPAAVDTSQDHVLRPPVA* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1949 236 Gene3D - 73 156 IPR036638 GO:0046983
Dod03g1949 236 CDD bHLH_AtILR3_like 80 155 - -
Dod03g1949 236 Coils Coil 123 178 - -
Dod03g1949 236 PANTHER BHLH TRANSCRIPTION FACTOR 1 236 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Dod03g1949 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Dod03g1949 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 145 IPR036638 GO:0046983
Dod03g1949 236 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 236 - -
Dod03g1949 236 MobiDBLite consensus disorder prediction 51 79 - -
Dod03g1949 236 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Dod03g1949 236 SMART finulus 81 132 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1949 Dod-Chr3 43625856 43629761 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1949 1 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 73.222 9.68e-118 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod03g1949 HLH 5.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1949 - - gmx:100788858 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1949 03 43625856 43629761 Dod03g1949 03 43625856 43629761 ECH
Dod10g1117 10 30500322 30503141 Dod03g1949 03 43625856 43629761 PCT