LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod03g1947	ATGGGAATACAGAGATATATGGTTTCCACAAAGGCTAGCTTTTGTGCACTTTTGGTTCTTCTTCTTGTTGTTGCGGCAGTCAGCTTTGTGGAAAAGACAGGAACACGAGAAGACTATGTCGGAGAGCTGCTTGATCCAGCATCTGAATTGCTAGATGACGACACGGCAAAGGTAATATGGACCACTTGCTGGGAAAATTTCATTCATTCAAAGGAAGTGACTGAAGATCTTGATTTATGCCTCCAACAAAAGTTGCCCATTAGCTCCAATAAAATTGGTTCAGAGACTGGGCCATTAAAGCAAGCAGACATCCAAAAATTGATTACTGTTTGCCATTCTCAGTTCAAGGAAAATGTTGTTCACTGTTTAAGAAAAAATAATCTTCCATTACTTGTATCAGGGAAAGAGGATGATGATTCCAAGATTTGGCATGTTGCTTATATGGGATTGCAACTTTCAAGATCCAGTGCTCCTAGAACAATGGGTCGCATTTTGCTTCAGCAAATACCAGGTGCACCTAGTCCAGCCCCTGCAGTTGGATCACCTACACCCAGTTTATCACTGTCACCTGGACCCAGTCTAGCACCATCACCTGGATCCAGTCTAGCACCATCTCCTGGACTCAGTCTGGCCCCATCGTCTGCTCCAGCGCCTGTTGTTCCTAGACCTCTTCATCCTCCTGTGCCACCATCACCGTTTTTCCCCAAACTGACACCACAAATAGCTGCAGATGTTTCTGATCCTCCATCTTCTGACCCTAATAAACCGGCAGATAAGCATAGTAATAAAAAAACAGTTGTTATTGCTGTAGTTATAACTGCGTTGGTGACATCTATAGGAGTAGCACTGCTCTTTTTGTTCTGCAGTCGGCATTCAAAGACTGGCCGATTCAGAAAAAATGATGAGAGGCCCCTTCTCAGCTTGAGCATGAGTGACTACTCTGTTGGTCCTTCTAGTTTTGCATTTGGAAATTCAATGAAAGGGGAGAAACACGGGTTCCAAACATCAAGTAATAATTTGGTAGACAGCAAGAAGACCTCAGTCCAAGAAAGTCAATCTATAGGAGCTCTTAGTCCTGCTGTGGGATCACCATTTGAACTGAAACCTCCTTCCCAGTGGGCAGGAACCATACATTCTGGAATGCCCCCTTTAAAACCTCCTCCTGGCAGGCTGAATCCTCTCCCCCATGAGCCGCCTTCATTTAGGCCTTCTGGCAATGCTGCTGCTGCTCCTACCCCTGCTCCTTCTGGACCTCAAAATCTTGGTGTTGGTGGTGCTCCTCCTCCACCACAACCACACCCAGCGTTAGCTGATGTGAAACACGCTCCTCCTCCGCCACCACCCCAAGCATCAGCTGTTGCCAAACCTAGTCCTCCACCACCACCACCGCCTGCACCTGCTGCTACCAAACCTAGTCCTCCTCCACCACCACCGCCTGCACCTGCTGCTACCAAACCTAGTCCTCCACCTCCACCCCCAGCTCCAGCTGGTGCCAAACCTGGCCCTCGTCCACCGCCACCTCCTAAGAGTGGTATAGCTCCTCCTCGGCCTCCTCCTCCAATTGGGGCTCGAGCTTCAGCTAGCAGACCAAAAGCTACAGAGGATGTTGAGGCTAGTGCAGTTGAAGCTGGTGCTTCTAAAGCCAAGCTAAAGCCTTTCTTCTGGGATAAGGTTCAAGCTAACTCAGATCAATCAATGGTTTGGAATCAGATCAAGTCTGGATCATTCCAGTTTAATGAGGAGATGATAGAGACGCTTTTTGGTTATAATGCTGTGGATAAAAACAATGGGCAACGACCGTCTTCCTCCCAAGACCCTTCACCTCAGTATATCCAGATAATTGACAGAAAGAAAGCACAAAATTTATTAATTCTGTTGCGAGCATTGAATGTGACAATGGAAGAAGTTTGTGATGCACTTTATGAAGGAAATGAGCTGCCCTCTGAGTTCCTTCAAACCTTGCTGAAGATGGCACCAACATCTGATGAAGAACTTAAGCTTAGACTTTTTAGTGGTGAGGTATCACAGCTTGGGCCTGCCGACCAGTTCTTGAAAACCTTGGTTGACATTCCATTTGCTTTTAAGCGAATGGAAGCACTTCTTTTCATGAGTACACTTAAAGAGGAGCTCAATTCTACTATGGAGTCTTTTGAAATTTTAGAGGTTGCTTGTAAGGAACTAAGAAACAGCCGGCTTTTCCTCAAGCTTCTTGAAGCTGTTCTCAAAACTGGCAACCGTATGAATGACGGAACATTCCGTGGTGGTGCACAAGCATTTAAGCTTGATACACTTCTGAAATTATCTGATGTAAAAGGAACGGATGGCAAGACTACGCTGTTACATTTTGTTGTTCAGGAGATTATCCGCTCTGAAGGCATAAAAGCTGCTCGAGCGGCAAAAGAGAGCCGGAGTTCATCCGATATTAAAACTGATGACCTCCTTAAGGATAACTCTAATGAAACAGAAGATTACTACCGTGAAATTGGTCTTCAGGTGGTTTCCCACTTGAGCAGTGAACTCGAGAATGTCAAAAAAGCATCTGTTCTAGATGCTGACAGCTTAACAGGAACTGCTGCCAAACTTGGCCATGGTCTCATGAAAACCAAAGATTTGTTAAATAAAGACCTGAAGAATGTAGAGGAAGATAGAGGGTTTTGCGAGGCAGTGAAAAGTTTTGTGGAGGATGCTGAGACTGATGTCCTGAAACTGCTGGAAGAGGAGAAGAAAGTCATGGCTCTGGTGAAGAGCACTGGTGATTATTTTCATGGGAAGGCTGGCAAGGATGAAGGATTAAGGTTGTTTGTAATAGTAAGAGACTTCCTAATAATGTTGGACAAGGCATGCAAGGTGGTGAGAGATGCACAGAAGAAGCCAGCAAAGATTCAAAAACAAGAGACTTCTCAAGGATCATCTTCATCTTCCTCTGAAACTCGTCCGCCACCTTCTGATTTTCATCAGCGACTTTTTCCTGCAATCGCTGAAAGGAGGATTGGTGACAGTAGTTCAGATGATGAGAGTCCATAG	3024	0.4544	MGIQRYMVSTKASFCALLVLLLVVAAVSFVEKTGTREDYVGELLDPASELLDDDTAKVIWTTCWENFIHSKEVTEDLDLCLQQKLPISSNKIGSETGPLKQADIQKLITVCHSQFKENVVHCLRKNNLPLLVSGKEDDDSKIWHVAYMGLQLSRSSAPRTMGRILLQQIPGAPSPAPAVGSPTPSLSLSPGPSLAPSPGSSLAPSPGLSLAPSSAPAPVVPRPLHPPVPPSPFFPKLTPQIAADVSDPPSSDPNKPADKHSNKKTVVIAVVITALVTSIGVALLFLFCSRHSKTGRFRKNDERPLLSLSMSDYSVGPSSFAFGNSMKGEKHGFQTSSNNLVDSKKTSVQESQSIGALSPAVGSPFELKPPSQWAGTIHSGMPPLKPPPGRLNPLPHEPPSFRPSGNAAAAPTPAPSGPQNLGVGGAPPPPQPHPALADVKHAPPPPPPQASAVAKPSPPPPPPPAPAATKPSPPPPPPPAPAATKPSPPPPPPAPAGAKPGPRPPPPPKSGIAPPRPPPPIGARASASRPKATEDVEASAVEAGASKAKLKPFFWDKVQANSDQSMVWNQIKSGSFQFNEEMIETLFGYNAVDKNNGQRPSSSQDPSPQYIQIIDRKKAQNLLILLRALNVTMEEVCDALYEGNELPSEFLQTLLKMAPTSDEELKLRLFSGEVSQLGPADQFLKTLVDIPFAFKRMEALLFMSTLKEELNSTMESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGTDGKTTLLHFVVQEIIRSEGIKAARAAKESRSSSDIKTDDLLKDNSNETEDYYREIGLQVVSHLSSELENVKKASVLDADSLTGTAAKLGHGLMKTKDLLNKDLKNVEEDRGFCEAVKSFVEDAETDVLKLLEEEKKVMALVKSTGDYFHGKAGKDEGLRLFVIVRDFLIMLDKACKVVRDAQKKPAKIQKQETSQGSSSSSSETRPPPSDFHQRLFPAIAERRIGDSSSDDESP*	1008

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod03g1947	1007	MobiDBLite	consensus disorder prediction	216	236	-	-
	Dod03g1947	1007	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	540	970	IPR015425	-
	Dod03g1947	1007	MobiDBLite	consensus disorder prediction	422	524	-	-
	Dod03g1947	1007	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	608	968	-	-
	Dod03g1947	1007	MobiDBLite	consensus disorder prediction	330	358	-	-
	Dod03g1947	1007	MobiDBLite	consensus disorder prediction	989	1007	-	-
	Dod03g1947	1007	MobiDBLite	consensus disorder prediction	961	981	-	-
	Dod03g1947	1007	Pfam	Formin Homology 2 Domain	546	944	IPR015425	-
	Dod03g1947	1007	SMART	it6_source	540	959	IPR015425	-
	Dod03g1947	1007	PANTHER	FORMIN-RELATED	1	1005	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Dod03g1947	1007	MobiDBLite	consensus disorder prediction	181	208	-	-
	Dod03g1947	1007	MobiDBLite	consensus disorder prediction	381	400	-	-
	Dod03g1947	1007	MobiDBLite	consensus disorder prediction	330	540	-	-
	Dod03g1947	1007	Gene3D	Formin, FH2 domain	546	978	IPR042201	-
	Dod03g1947	1007	MobiDBLite	consensus disorder prediction	172	261	-	-
	Dod03g1947	1007	MobiDBLite	consensus disorder prediction	955	1007	-	-
	Dod03g1947	1007	PANTHER	FORMIN-LIKE PROTEIN	1	1005	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod03g1947	Dod-Chr3	43457907	43465152	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod03g1947	462	997	FH2 protein (formin) Gene Family	AT5G54650	61.524	0.0	607

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod03g1947	03	43457907	43465152	Dod03g1947	03	43457907	43465152	ECH
	Dod10g1112	10	30467194	30473665	Dod03g1947	03	43457907	43465152	PCT