Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1939 ATGGGAAATTTAACGGATCAGTCTCTCCCTTCTCTCTACTCTCTAGAATTCTCTCATTTAAGGGTTTACCTTAAACCCACGGCCATGGCGATGAGGGCGGCAGTGGCGGCGGCGCCCCGCGGTTTTCGGCGGTTGTTCTGCACAAATTCAACCTCCTCTTCTTCTTCGAATTTCCCCTTTATTCCAGCGCCGCCGGCGGGGTCCCCGCCAGCCCGACAGATGGCGGAGCCCAACACCAACCTCTTCGTCTCTGGGCTTAGCAAACGCACAACAACAGAAAAACTGAGGGAGGAATTTTCAAAGTTTGGTGAAGTAGTTCATGCAAGAGTGGTAACTGATCGAGTATCAGGTTACTCTAAGGGGTTTGGTTTTGTGAAGTATGCTACTATAGAAGAGGCTGCAAAGGGCATTGAAGGCATGGATGGCAAGTTTCTGGATGGTTGGGTTATATTTGCAGAGTATGCAAGACCAAGACCACCACCGGGACAACCTGTAAATAATATGCCTCCTCAGCATTACCGTCAGTGA 528 0.5 MGNLTDQSLPSLYSLEFSHLRVYLKPTAMAMRAAVAAAPRGFRRLFCTNSTSSSSSNFPFIPAPPAGSPPARQMAEPNTNLFVSGLSKRTTTEKLREEFSKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEAAKGIEGMDGKFLDGWVIFAEYARPRPPPGQPVNNMPPQHYRQ* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1939 175 Gene3D - 48 164 IPR012677 -
Dod03g1939 175 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 157 IPR000504 GO:0003723
Dod03g1939 175 PANTHER TRANSFORMER-2-RELATED 28 173 - -
Dod03g1939 175 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE 28 173 - -
Dod03g1939 175 SUPERFAMILY RNA-binding domain, RBD 58 170 IPR035979 GO:0003676
Dod03g1939 175 SMART rrm1_1 80 153 IPR000504 GO:0003723
Dod03g1939 175 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 147 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1939 Dod-Chr3 43122168 43124778 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1939 80 156 Eukaryotic Initiation Factors Gene Family AT2G23350 38.961 8.30e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1939 - - gmx:100789351 197.978