Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1925 ATGGATCTCCTGTGCGACGCATATTCCAATTCCTCAGATGATGAAGAACAACCGGAACAGCAACAATCACCACCACCCAAACGTCAGAGGCTCTCACTATCTTCACTGAACCCACCAAAACCCTATCTTCCTGCAACTCCTTCTCCGTCTTCACTTTACAACCTCCAAACACAAGCTCCCATTCCCATTCCTGGAAGTTATGTTTCCAAGCGACAACGTGCACTTCTGGGTTCTCTCCCCTCTCTTCCTGACCCTGTCCATACTCCTTCCCCGGTTCAATCTTCATCTACACTCTCTGGAAGTATCTCAGATGATGATATACCACATAGCATTTTATCATTGTTGAAAAATAAAGCAAAGTGTCATCGAAATGTGAGCTCGATGCCTGGAAATCTATCTATAGGTCTATATGGGCATACAAAAGCTGTCAATGCTATACATTGGTCATCAACTCATTCTCATCTCCTTGCATCCGCTGGGATGGATCATACAATTTGCATATGGAATGTGTGGAGCAAAGATCAGAAGAAGGCACGTGTGCTAAACTTCCATAATGCTGCAGTGAAAGATGTGAGATGGTCTCAGCAAGGGCTCTTTCTACTTTCTTGTGGATATGACTGCACATCAAGATTGATTGATGTTGAAAATGGATTGGAGACTCAGGTTTTCAGAGAAGATCAAGTTGTTGGAGCTATTAAGTTCCATCCAGACAATTCAAATCTTTTCCTTTCTGGCGGATCCAAGGGCCATATCAAACTGTGGGATATCAGAACAAGAAAAGTAGTGCATGATTATAATCGAAATTTAGGTCCAATTCTGGATGTTGAGTTTACAATGAACGGGAAGCAATTCATTTCTTCTAGTGATGTATCTGGGACCAATGTTAGTGAGAATTCCATTATTGTTTGGGATTTGTCAAGACAGGTTCCATTGTCTAATCAGGTTTATGTGGAAGCTTATACCTGTCCCTGTGTAAGATGCCACCCATTTGATCCGATTTTTGTTGTCCAGTCCAATGGGAATTATGTTGCTATTTTTACTGCCACCCCACCTTACAGACTCAACAAATATAAGCGGTTCGAGAGCCATGCTGTCTCTGGGTTCCCAATTAAGTGCAATTTCAGCTTGGATGGGAAGAACCTTGCCTCAGGCTCTTCAGATGGTTCTATTTATCTTTATGATTGTCAGTCATCCAAAGTTGTTAACAAAATTAAGGCCTCCGACCAAGCGTGCATAGATGTTGCCTTCCACCCTGTTATACCTAATTGTATTGCTTCATGCTCTTGGGATGGAAGCATTTCAGTATTTGAGTAG 1314 0.4216 MDLLCDAYSNSSDDEEQPEQQQSPPPKRQRLSLSSLNPPKPYLPATPSPSSLYNLQTQAPIPIPGSYVSKRQRALLGSLPSLPDPVHTPSPVQSSSTLSGSISDDDIPHSILSLLKNKAKCHRNVSSMPGNLSIGLYGHTKAVNAIHWSSTHSHLLASAGMDHTICIWNVWSKDQKKARVLNFHNAAVKDVRWSQQGLFLLSCGYDCTSRLIDVENGLETQVFREDQVVGAIKFHPDNSNLFLSGGSKGHIKLWDIRTRKVVHDYNRNLGPILDVEFTMNGKQFISSSDVSGTNVSENSIIVWDLSRQVPLSNQVYVEAYTCPCVRCHPFDPIFVVQSNGNYVAIFTATPPYRLNKYKRFESHAVSGFPIKCNFSLDGKNLASGSSDGSIYLYDCQSSKVVNKIKASDQACIDVAFHPVIPNCIASCSWDGSISVFE* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1925 437 Gene3D - 115 437 IPR015943 GO:0005515
Dod03g1925 437 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 437 - -
Dod03g1925 437 MobiDBLite consensus disorder prediction 1 57 - -
Dod03g1925 437 SMART WD40_4 216 255 IPR001680 GO:0005515
Dod03g1925 437 SMART WD40_4 397 437 IPR001680 GO:0005515
Dod03g1925 437 SMART WD40_4 129 169 IPR001680 GO:0005515
Dod03g1925 437 SMART WD40_4 174 213 IPR001680 GO:0005515
Dod03g1925 437 SMART WD40_4 258 304 IPR001680 GO:0005515
Dod03g1925 437 SMART WD40_4 355 394 IPR001680 GO:0005515
Dod03g1925 437 Pfam WD domain, G-beta repeat 360 394 IPR001680 GO:0005515
Dod03g1925 437 Pfam WD domain, G-beta repeat 178 212 IPR001680 GO:0005515
Dod03g1925 437 Pfam WD domain, G-beta repeat 229 255 IPR001680 GO:0005515
Dod03g1925 437 Pfam WD domain, G-beta repeat 136 169 IPR001680 GO:0005515
Dod03g1925 437 MobiDBLite consensus disorder prediction 78 103 - -
Dod03g1925 437 MobiDBLite consensus disorder prediction 10 36 - -
Dod03g1925 437 MobiDBLite consensus disorder prediction 88 103 - -
Dod03g1925 437 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 136 170 - -
Dod03g1925 437 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 222 258 - -
Dod03g1925 437 ProSiteProfiles Trp-Asp (WD) repeats profile. 222 264 IPR001680 GO:0005515
Dod03g1925 437 ProSitePatterns Trp-Asp (WD) repeats signature. 156 170 IPR019775 -
Dod03g1925 437 ProSiteProfiles Trp-Asp (WD) repeats profile. 136 178 IPR001680 GO:0005515
Dod03g1925 437 SUPERFAMILY WD40 repeat-like 129 436 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1925 130 393 U-box Gene Family AT1G04510 24.188 9.36e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1925 K24742 - gmx:100790592 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1925 03 42265804 42288974 Dod03g1925 03 42265804 42288974 ECH