Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1898 ATGTCCACCTCCACAATAGAACCAGACACCTCACGTGCCTCCCACATGCACCTCTACACCACCACTGATGACGACGACGACGACGACGACGACATCAGCGACAGCGACCAAGACCCCGACGATGACCACGTCGACAACAGAAAGGAGCACGACAACGACGCCGCGGTCGGATGGTGCTGCCGGCCGGCCGCCACAAACGGTGGATACCGGCGGCGGCGGAGCTGGTGGCCGCCGCTTGGTGGGGTTCTGGACCCGAGGTCGAAATGGGTCCAAGAATGGAACAGAGTGTTCCTGCTGGTGTGCGCGACGGGGCTGTTTGTAGACCCGCTGTTCTTCTACGCGCTGTCCGTGAGCCGCACATGCATCTGCCTCTTCGTCGACGGGTGGTTCGCCGTCACGGTAACGGTGCTGCGGTGCATGACGGATGCTCTGCACCTGTGGAACATGTGGCTGCAGCTCAAGATGGCCAAAAGGTCGTTCGGGTCGGGTGTTGCCACCGCTTCGGCAGCCGATGGCGGTGGAGACCTCAGGGACGCTAGCCCTCGCTCCGTAGCTGTTAGGTGCCTTAAGGCTAAGAGCGGCTTCTTGCTTGATATTTTCGTTATCCTCCCTATACCGCAGATTGTGCTTTGGGTGGCAATCCCCTCCCTGTTAGAGAAAGGCTCAGTCACATTGGTGATGACTCTGTTCTTAATTATGTTTCTCTTCCAATACCTTCCCAAAATCTATCACTCTGTCTGCCATCTTCGACGCATGCAAAACCTCTCTGGCTACATTTTCGGAACCGTTTGGTGGGGTATCGCCCTTAACATGATCGCGTACTTCGTCGCCTCCCATGCAGCAGGGGCGTGTTGGTACTTGCTGGGGATCCAGAGGGCAGCCAAGTGCCTCAAAGAGCAGTGTGGGAAAACAACTGGTTGTGGCACGAGAATCCTGACATGTAAAGAACCCATATATTATGGAAGCACTAGCTTGGTTACGGATAGAGCAAGGCTGGCATGGACACGTAACAGTGAAGCAAGGAACATATGCTTAGATGGAACTGAGAGCTATAGTTATGGAGCTTATAAGTGGACTGTTCAGCTTGTCACCAATGATAACCGGTTGGAAAAGATACTTTTCCCTATCTTCTGGGGCCTAATGACTCTCAGCACTTTTGGTAACCTAGAGAGCACAACAGAATGGCTAGAAGTAGTTTTCAACATTATTGTGTTGACCAGTGGCCTCCTTCTCGTCACTATGTTGATTGGAAACATCAAGGTGTTTTTGCATGCCACAACATCAAAGAAGCAAGCCATGCATTTGAAGATGAGGAATATTGAATGGTGGATGAGGAAAAGACGCCTGCCGCAAGGGTTTCGACAGCGTGTGCGAAACTACGAACGACAGCGTTGGGCAGCCATGCGCGGCGTTGATGAATGTGATATGACCGGAAATCTCCCTGACGGGCTTAGAAGAGACATAAAGCACCACCTTTGTTTGGGTTTGGTGAGGCAGGTGCCACTGTTTCAGCATATGGATGATCTGGTACTGGAGAACATATGTGACCGCGTGAAGTCTCTCATATTCACAAAGGGAGAAACAATAGCCAGAGAAGGAGACCCGGTTCAAAGAATGCTATTTGTGGTAAGGGGTCATCTTCAGAGCAGCCAAGTCCTAAGGGACGGGGTGGAAAGTTGCTGCATGTTAGGTCCTGGAAACTTCAGTGGGGACGAGCTCCTTTCATGGTGTTTAAGGAGACCCTTCATAGAACGCCTTCCACCATCTTCATCAACTCTTGTCACACTTGAAACCACAGAGGCATTTGGGCTTGAAGCTGAGGACGTCAAGTACGTGACGCAACATTTCAGGTATACTTTTGTGAAGGAAAAGGTAAAGATAAGCGCGAGGTATTATTCACCAGGGTGGAGAACTTGGGCTGCAGTGGCCATACAATTGGCATGGAGGAGGTACAAGCATCGCTTGACTTTGACTTCACTGTCGTTTATAAGGCCTAGGAGGCCACTGTCACGGAGCTCTTCAATGGGAGAGGACAGGCTCAGGCTCTACACGGCTTTGTTAACCTCACCAAAGCCCAATCAGGATGACTTTGACTTTTGA 2100 0.5157 MSTSTIEPDTSRASHMHLYTTTDDDDDDDDDISDSDQDPDDDHVDNRKEHDNDAAVGWCCRPAATNGGYRRRRSWWPPLGGVLDPRSKWVQEWNRVFLLVCATGLFVDPLFFYALSVSRTCICLFVDGWFAVTVTVLRCMTDALHLWNMWLQLKMAKRSFGSGVATASAADGGGDLRDASPRSVAVRCLKAKSGFLLDIFVILPIPQIVLWVAIPSLLEKGSVTLVMTLFLIMFLFQYLPKIYHSVCHLRRMQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAKCLKEQCGKTTGCGTRILTCKEPIYYGSTSLVTDRARLAWTRNSEARNICLDGTESYSYGAYKWTVQLVTNDNRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMHLKMRNIEWWMRKRRLPQGFRQRVRNYERQRWAAMRGVDECDMTGNLPDGLRRDIKHHLCLGLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETIAREGDPVQRMLFVVRGHLQSSQVLRDGVESCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLVTLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKISARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPLSRSSSMGEDRLRLYTALLTSPKPNQDDFDF* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1898 699 SUPERFAMILY Voltage-gated potassium channels 84 423 - -
Dod03g1898 699 MobiDBLite consensus disorder prediction 1 48 - -
Dod03g1898 699 MobiDBLite consensus disorder prediction 23 39 - -
Dod03g1898 699 Pfam Ion transport protein 93 419 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Dod03g1898 699 CDD CAP_ED 502 608 IPR000595 -
Dod03g1898 699 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 14 696 - -
Dod03g1898 699 Gene3D Jelly Rolls 500 618 IPR014710 -
Dod03g1898 699 ProSiteProfiles cAMP/cGMP binding motif profile. 502 612 IPR000595 -
Dod03g1898 699 SUPERFAMILY cAMP-binding domain-like 428 616 IPR018490 -
Dod03g1898 699 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 14 696 - -
Dod03g1898 699 MobiDBLite consensus disorder prediction 1 17 - -
Dod03g1898 699 Gene3D Helix hairpin bin 427 493 - -
Dod03g1898 699 Pfam Cyclic nucleotide-binding domain 523 610 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1898 Dod-Chr3 40441993 40457656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1898 61 698 Ion Channels AT5G54250 78.471 0.0 1026
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1898 K05391 - mnt:21401699 1110.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1898 03 40441993 40457656 Dod03g1898 03 40441993 40457656 ECH