Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1894 ATGGCAACTCAGATGAGCAAGAAGAGAAAGTTCGTAGCTGATGGAGTTTTCTTCACTAAGCTGAATGGGGTTCTCACTAGAGAGCTCACTGAGGATGGTTACTCTGGGGTCAAGGTTAGGGTTACCCCGATGCGCACTGAGATCATCATCAAGGCTACTCGTACTCAAGCTTTTGTTGGTCAGAAAGGTAGGAGGATTAGGGAGTTAACCTCTGTGGTGCAGAAGAGGTTCAAGTTCCCTGAGAACAGTGTGGAACTTTATGCTGAGAAGGTGAATAATAGGGGTCTTTGTGCTATTGCCCAGGCAGAGACTCTTCGCTACAAGCTCCTCCATGGTCTTGCTGTCATTGTTAGTGGAAAATTGAGGGCCCAGAGAGCCAAATCCATGAAGTTCAAGGATGACTATATGATTTCTTTTGGCCAACCAATCAAGGATTACATTGACTCTACAGTGAGGCACGTCCTGCTTAGACAG 474 0.4641 MATQMSKKRKFVADGVFFTKLNGVLTRELTEDGYSGVKVRVTPMRTEIIIKATRTQAFVGQKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAETLRYKLLHGLAVIVSGKLRAQRAKSMKFKDDYMISFGQPIKDYIDSTVRHVLLRQ 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1894 158 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
Dod03g1894 158 CDD 40S_S3_KH 15 95 - -
Dod03g1894 158 PANTHER 40S RIBOSOMAL PROTEIN S3-A-RELATED 2 115 - -
Dod03g1894 158 PANTHER 40S RIBOSOMAL PROTEIN S3-A-RELATED 112 158 - -
Dod03g1894 158 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 2 115 - -
Dod03g1894 158 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 112 158 - -
Dod03g1894 158 Gene3D - 110 158 IPR036419 -
Dod03g1894 158 Gene3D - 1 92 IPR015946 -
Dod03g1894 158 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 157 IPR036419 -
Dod03g1894 158 Pfam KH domain 24 93 IPR004044 GO:0003723
Dod03g1894 158 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1894 Dod-Chr3 39981144 39982546 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1894 1 158 Cytoplasmic Ribosomal Protein Gene Family AT2G31610 74.302 1.13e-90 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1894 K02985 - gmx:100499737 266.159