Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1877 ATGTCTTCTTCCTCCTCACATGAAGTTATCCTCACCAGCTCCCCAGATGGCCCCATCATGGCCTACGATGCTTCCAGCGGCGCCACCATCGCCCGGTTCACGGGTAGCCGGTCACCGTGCCGCGGCCTCACCATGGCTGGACGAGGACTAATTGCAGCCTCCCATGTGTTCTCAGACACAGGTGCTGGTTCAATCCACATATACAACTGGTATACTCCAACTGTGTTCTGCAACTTCACTGTCCCTGAACCAGTTGCCCCACTAACTGCAACCTCTGATGGTGCCTTCCTCTTTGCCGGTGGCCTGTCAGGGAGTATTCATTCCCTCTCACTCCCTTCGGGGGATGTCATCAAATCCTTTGTTGCTCACTCAAAACCCGTTTCTAGTCTCCAGCTCAGCGATGATGGCTCACTTGTGATTTCAGGTAGCAATGATGGCACCATTGCTGTGGTCCCAACCTTCAGGCTTCTTGAGGCCTCCACCTCAGCTGGAGATGACCCAAAGGACTTGATCTTACATCAGTGGAAGGCACATTCGGATTCAGTGACAGCTTTCAGCTCTGGGATAAGGCTGTACGGCACTGCCATGGTTTCTTGCTCTCTGGACTGCACATGCAAGTTCTGGAGCCTATCAGATGGAACTCTCTTACGCACAGTGGCATTCCCTTGTGCCATTTTCGGGGTTGCCATAGATTCAAGAGAGTCAGGATTCTATGCAGCTGGTGCTGATGGGTTGGTTTATAAGGGATCAATGAAGGCTGGAAGCGAAAAACGGCTAGGCCAAACCTGTGAATTGATCTCCTGGTCTAAAAGCCATAGCGGGTCAATTGTATCTTTGGTTTTGGTGAATTCGGGGAGGAATTTGGTCTCTGCTGCAGAAGATGGGAGTGTTTCGATGTGGGATGTTGAGAAAGGAGAGGTCACTATGGTTCTAGCGAATGACATGGGAAGCATCAGCGATATGCTGGTGGCCAGAGGCACCACTGAGTGTGGGGTCAGAAAGGGAAATGCTTGTGGTGAAGAGGCTAATATCCTCACTTCTTCTTCTGATGAAGAGATGATCAAGACACTGAAGCAAATCACAGAGCTTGGAGATGTCATGGATGTGGTAGCAGAAGACAAGAAAAGAGCCATTGACATGCTGGAATCGACAATAGGATTGTACGAGAGGCTCTTGAAACTTATCTTTAAGGAGGCTACGAAAGCCATTAGTAGCGATGATGATGACAGAGAAGACTAA 1239 0.4988 MSSSSSHEVILTSSPDGPIMAYDASSGATIARFTGSRSPCRGLTMAGRGLIAASHVFSDTGAGSIHIYNWYTPTVFCNFTVPEPVAPLTATSDGAFLFAGGLSGSIHSLSLPSGDVIKSFVAHSKPVSSLQLSDDGSLVISGSNDGTIAVVPTFRLLEASTSAGDDPKDLILHQWKAHSDSVTAFSSGIRLYGTAMVSCSLDCTCKFWSLSDGTLLRTVAFPCAIFGVAIDSRESGFYAAGADGLVYKGSMKAGSEKRLGQTCELISWSKSHSGSIVSLVLVNSGRNLVSAAEDGSVSMWDVEKGEVTMVLANDMGSISDMLVARGTTECGVRKGNACGEEANILTSSSDEEMIKTLKQITELGDVMDVVAEDKKRAIDMLESTIGLYERLLKLIFKEATKAISSDDDDRED* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1877 412 PANTHER OS09G0477800 PROTEIN 3 408 - -
Dod03g1877 412 ProSitePatterns Trp-Asp (WD) repeats signature. 288 302 IPR019775 -
Dod03g1877 412 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 269 306 - -
Dod03g1877 412 Gene3D - 159 363 IPR015943 GO:0005515
Dod03g1877 412 ProSiteProfiles Trp-Asp (WD) repeats profile. 120 150 IPR001680 GO:0005515
Dod03g1877 412 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 120 150 - -
Dod03g1877 412 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 5 306 IPR011047 -
Dod03g1877 412 Pfam WD domain, G-beta repeat 115 148 IPR001680 GO:0005515
Dod03g1877 412 Pfam WD domain, G-beta repeat 172 209 IPR001680 GO:0005515
Dod03g1877 412 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 310 IPR001680 GO:0005515
Dod03g1877 412 SMART WD40_4 262 301 IPR001680 GO:0005515
Dod03g1877 412 SMART WD40_4 113 152 IPR001680 GO:0005515
Dod03g1877 412 SMART WD40_4 168 209 IPR001680 GO:0005515
Dod03g1877 412 Gene3D - 1 158 IPR015943 GO:0005515
Dod03g1877 412 PANTHER WD-REPEAT PROTEIN 18 3 408 IPR045227 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1877 Dod-Chr3 38360337 38361584 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1877 100 304 U-box Gene Family AT1G04510 28.910 3.88e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1877 K14829 - gmx:100785191 516.538