Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1854 ATGGGAGAAACACATCATCACCGTCAACAAGCAACAACATCGTCAAGACTGGGGATGAGGGCAGCGGGCGGAGGAGAAATCGTGGAGGTCCAAGGGGGCCACATTGTCCGCTCCACCGGGCGTAAGGACCGCCACAGCAAGGTCTGCACCGCCAAGGGACCTAGGGACCGGCGGGTGCGGCTCTCCGCTCACACCGCCATCCAATTCTACGACGTTCAGGACCGACTCGGATACGACCGCCCCAGCAAGGCGGTCGACTGGCTCATCATGAAGGCCAAGGCCGCCATCGACGAGCTCGCCGAGCTCCCCGCATGGAAACCCACTGCCACCACATCATCGAACTCAAATGTCTATCAGAAGCAGCAGGAGCAAGAACACCGGCTGAACCCGATCGTTCACCACGAGCCAACGGTGGACGATGCGATAATTGCTTCCGGTAGCCGCAGGGTTACTGGAGCAGCAGCGTTGGTGGGCGGCGGCGGAGGAGGAGGAGGGAGAATCTCGGAGTTCCAGCGGCAGCAATTGAGCCAAGACGACAACAGCAACAGCAAATATAACAGTGGCGGTTCTGCTTTTCTTCCACCGACGCTGGACACAGACATTGCAGACACGATTAAGTCGTTCTTCCCGATGGTTGCGGCGGCGGAGACGACGTCGTCGTTTCAGAACTGCCCTACGCCTCCTGATTTGCTCTCGCGGACGACCAGCGGCTCCAGCAACCAGAGCCACCACCACCATCAGCAGCAAGATCTGCGGCTTTCGCTACAGTCCTTCCAGGACCCGATCCTCCTCCACCACAACCATCACCAGCAGCATGTTCACGAGCAAGTGTTCTTCGCCGGAACCACCGCGCTAGGGTTCGACGGCGGTTCTTCCGGGTGGTCCGAGCAGCAGAACCAACAAGAGGAACAGGAAAACAACCGATTTCAGAGAATAGTGGCTTGGAATAATGCTGCTGCTGCAGCAGCAGAGGCTGGTAGCAGTGGCCATGGCGGCGGATTCATCTTCTCCTCGCCGGCTGCGGCGGCTGTGCCGTCGCCGGCGGTGTTCGGGCTTGGCCAGTTTTTTTCACAGAGGGGACCCCTTCAGTCCAGTAACACCCCTACGATTCGTGCTTGGATAGATCCTCCTTCGATCGGTGCCGCAGCGGTATCGGTTGATCACCACCACTATCTTTCGCCGGCGGCGATCCATCAGGTTCAGGCTTCTATCGGATTCGCCGGTTCTTCTTCCGGCGGCTTCTCCGGCTTCCGCGTACCAGCACGAATTCAGGGTGAAGAGGAGCACGACGGCGTATCTGACAAGCCGTCCTCTGCTTCCTCTGATTCTCGCCATTGA 1338 0.5912 MGETHHHRQQATTSSRLGMRAAGGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIMKAKAAIDELAELPAWKPTATTSSNSNVYQKQQEQEHRLNPIVHHEPTVDDAIIASGSRRVTGAAALVGGGGGGGGRISEFQRQQLSQDDNSNSKYNSGGSAFLPPTLDTDIADTIKSFFPMVAAAETTSSFQNCPTPPDLLSRTTSGSSNQSHHHHQQQDLRLSLQSFQDPILLHHNHHQQHVHEQVFFAGTTALGFDGGSSGWSEQQNQQEEQENNRFQRIVAWNNAAAAAAEAGSSGHGGGFIFSSPAAAAVPSPAVFGLGQFFSQRGPLQSSNTPTIRAWIDPPSIGAAAVSVDHHHYLSPAAIHQVQASIGFAGSSSGGFSGFRVPARIQGEEEHDGVSDKPSSASSDSRH* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1854 445 Pfam TCP family transcription factor 40 126 IPR017887 -
Dod03g1854 445 MobiDBLite consensus disorder prediction 1 21 - -
Dod03g1854 445 ProSiteProfiles TCP domain profile. 41 99 IPR017887 -
Dod03g1854 445 MobiDBLite consensus disorder prediction 218 244 - -
Dod03g1854 445 PANTHER TRANSCRIPTION FACTOR TCP4 1 445 - -
Dod03g1854 445 MobiDBLite consensus disorder prediction 422 445 - -
Dod03g1854 445 MobiDBLite consensus disorder prediction 417 445 - -
Dod03g1854 445 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 445 IPR005333 GO:0003700
Dod03g1854 445 MobiDBLite consensus disorder prediction 218 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1854 Dod-Chr3 35960752 35964540 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1854 23 445 TCP Transcription Factor Family AT3G15030 47.392 8.95e-99 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Dod03g1854 TCP 1.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1854 - - aip:107630075 508.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1202 10 31824926 31827270 Dod03g1854 03 35960752 35964540 ECH
Dod03g2025 03 46838910 46839989 Dod03g1854 03 35960752 35964540 ECH
Dod03g1854 03 35960752 35964540 Dod03g1854 03 35960752 35964540 ECH