Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1830 ATGGATGACGACCACGACAACAACAGGGTCCGCAGAATCCCAGTATCCCCATCGCCGCCGCCACCTTCGCCTCCCTTGGGTTCATTCATCGCTGCTCTAACCATCGCAACGCTAATCTTCATGTGCATTTACGTCTTTTCCAACGTTGTTTCCGTGGCCATAGTCCTCGCCCTTTGCATCGCCAGCGTGTTCATTTGCAGGTTTATGCAAGGAAATAAATCGATAGGATCTGTTGTGCGTTTTGCTAGCAAAGCAACGGCATCAAGTAGCTGTGACTGTGCGATTTGCTTGGAGAATTTCAAGAACCGAGAGGAATGCTTAGTTTTCCCATTTTGTGGCCATCTTTTTCATCAGATTTGTATCAACCATTGGCTAAAGAACAAGCACACGTGTCCAATTTGTCGACATCGTATTCCACCATCAACGACCAAGATCACGGAAACTGGAAACACAGAATTCTTAGCGAATTTAGTTTAA 477 0.4612 MDDDHDNNRVRRIPVSPSPPPPSPPLGSFIAALTIATLIFMCIYVFSNVVSVAIVLALCIASVFICRFMQGNKSIGSVVRFASKATASSSCDCAICLENFKNREECLVFPFCGHLFHQICINHWLKNKHTCPICRHRIPPSTTKITETGNTEFLANLV* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1830 158 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 73 142 - -
Dod03g1830 158 Pfam Ring finger domain 92 135 IPR001841 -
Dod03g1830 158 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 4 73 - -
Dod03g1830 158 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 4 73 - -
Dod03g1830 158 SUPERFAMILY RING/U-box 87 141 - -
Dod03g1830 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 143 IPR013083 -
Dod03g1830 158 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 73 142 - -
Dod03g1830 158 SMART ring_2 93 134 IPR001841 -
Dod03g1830 158 MobiDBLite consensus disorder prediction 1 22 - -
Dod03g1830 158 ProSiteProfiles Zinc finger RING-type profile. 93 135 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1830 Dod-Chr3 30719669 30721676 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1830 70 141 C3H Transcription Factor Family AT1G53010 43.056 2.20e-15 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1830 - K10663 aip:107632916 159.458