Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1822 ATGGAGGTCAAAAAGGGAAAGCTTGTCAGGTTCTACTCGGATGGCAAAAAGAGTAGAGGACCGACGACACTTGAAAAGTCATCGTCCACCTACAAAATCATGTCGTCTTCCTTGCATAAAGCAAGCAGTGCACTGCCATTAGGGAAAAATAGGTTTGGTGACACATTTAGAAGTGGGGGATCTAAGGTATTCCCCGAAGACCATGAGCCGTGGAGCAAAAGAATTCTTGACCCGGGCAGTGAGATTGTGTTAAAATGGAACCGGATTTTTATAGTTTCATGCTTGGTGGCTCTTTTTGTCGACCCACTCTACTTTTTTTTGCCCAGTGTGAGAGGAAATGCGAGGTCTTCATGTGTGAGGACAGACCTAACATTACGGATCGTTGTGACCTTTCTTCGCACTATTGCTGATGTCTTTTATCTGTTGCACCTAATCATTAAGTTCAGAACAGCATATGTCGCCCCCAGCTCACGGGTATTTGGCAGGGGTGAACTTGTCATGGACCCAAAGAAAATTGCAAGGAGATATATCAGATCTGATTTCTTCATTGATTTTATTGCCACACTACCTCTACCACAGATGGTTATCTGGTTTATCATACCAGCAACAAGAAGCCCTCAGACTGATCACAAGAATAATGCTCTTGCATTGATTGTCTTGCTTCAATATGTTCCGAGATTATACTTGATTTTTCCGTTAAGTACTCAAATAATCAAGGCAACGGGAGTAGTTACAAAGACTGCCTGGGCAGGAGCTGCATATAATCTTCTATTGTATATGTTGGCTAGTCATGTCTTAGGGGCAGCTTGGTATCTTCTGTCTGTGGACCGTTATACTACATGTTGGAAATCCTTTTGCAAAAAAGAACCTAGCCCTGAAAATTGCTTTCTTTACCTGGACTGTAGTTCTTCTAATAATGAGCAGCGCAGGATATGGGCAAATAATACAAATGTGTTTGACAGATGTGATCCCAATAATGATGATTTCAAGTTTGGGATATTTGAAAATGCAGTAAAGAAACAAGTTGTCTCGTCGAACTTTATCCGAAAATACTTTTATTGTTTGTGGTGGGGGTTGCAGCAATTAAGTTCTTATGGTCAGAACCTAGACACGAGCACATTTATTGGAGAAACATCCTTTGCCATTCTCATTGCCATCTTGGGTCTTGTATTATTTGCCCATTTGATTGGGAACATGCAGACATATTTGCAATCAATTACTTTAAGGCTTGAGGAGTGGAGACTTAAGCGAAGAGACACAGAGGAGTGGATGAGGCATCGCCAGCTCCCTGAAGATTTGAAAAGTCGTGTTAGACGATTTGTTCAATATAAATGGCTTGCAACTCGTGGAGTTGATGAAGAAACCATTCTACGTGCATTGCCTACAGATCTTCGCCGTGATATCCAATGCCACCTATGCTTAGACCTTGTTCGGCGAGTTCCATTCTTCTCACAGATGGATGATCAGCTTCTTGATGCAATATGTGAGCGGCTGGTATCTTCTCTCAGCACTCAAGGTACCTACATTGTTCGTGAAGGTGACCCTGTGACTGAAATGCTGTTTGTTATCAGAGGTAGATTGGATAGTTCTACTACAAATGGTGGCCGGACTGGTTTCTTCAACTCAATCACATTGAGACCTGGAGACTTCTGTGGTGAGGAACTGCTTTCTTGGGCTTTACTACCAAAATCAACCACCAATTTGCCTTCTTCAACTAGGACAGTTAAAGCTCTCAGTGAGGTTGAAGCTTTTGCTCTTCGGGCTGAAGACCTCAAGTTTGTTGCTAACCAATTTCGGCGCCTCCACAGTAAGAAGCTGCAGCACACCTTTCGATTTTACTCCCATCACTGGAGGACTTGGGCAGCTTGCTTTATACAGGCTGCTTGGCGCCGTTATAAGAAAAGGATGTCTACCAAAGACCTCACTTTGAGGGAAGCTGCTCCTCTAGATGAGACAGTGGTCAGTGAGAGAGACCATGAAGAGGAATATCCTGATGGTTCAAATTCATCTCAGGTCAAATTGAACCTTGGGGCCACAATACTTGCTTCAAGGTTCGCTGCCAACACAAGAAGAGGAGCCTTGAAGATTAAAGATGACCTGCCTAAGTTGCGGAAACCGGAAGAACCTGACTTTTCCACTGAAGGTGACGATTTGTAA 2157 0.4321 MEVKKGKLVRFYSDGKKSRGPTTLEKSSSTYKIMSSSLHKASSALPLGKNRFGDTFRSGGSKVFPEDHEPWSKRILDPGSEIVLKWNRIFIVSCLVALFVDPLYFFLPSVRGNARSSCVRTDLTLRIVVTFLRTIADVFYLLHLIIKFRTAYVAPSSRVFGRGELVMDPKKIARRYIRSDFFIDFIATLPLPQMVIWFIIPATRSPQTDHKNNALALIVLLQYVPRLYLIFPLSTQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGAAWYLLSVDRYTTCWKSFCKKEPSPENCFLYLDCSSSNNEQRRIWANNTNVFDRCDPNNDDFKFGIFENAVKKQVVSSNFIRKYFYCLWWGLQQLSSYGQNLDTSTFIGETSFAILIAILGLVLFAHLIGNMQTYLQSITLRLEEWRLKRRDTEEWMRHRQLPEDLKSRVRRFVQYKWLATRGVDEETILRALPTDLRRDIQCHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFVIRGRLDSSTTNGGRTGFFNSITLRPGDFCGEELLSWALLPKSTTNLPSSTRTVKALSEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKKRMSTKDLTLREAAPLDETVVSERDHEEEYPDGSNSSQVKLNLGATILASRFAANTRRGALKIKDDLPKLRKPEEPDFSTEGDDL* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1822 718 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 46 714 - -
Dod03g1822 718 PRINTS EAG/ELK/ERG potassium channel family signature 395 404 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dod03g1822 718 PRINTS EAG/ELK/ERG potassium channel family signature 144 153 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dod03g1822 718 PRINTS EAG/ELK/ERG potassium channel family signature 351 368 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dod03g1822 718 PRINTS EAG/ELK/ERG potassium channel family signature 261 271 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dod03g1822 718 PRINTS EAG/ELK/ERG potassium channel family signature 445 452 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dod03g1822 718 PRINTS EAG/ELK/ERG potassium channel family signature 377 388 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dod03g1822 718 SMART cnmp_10 482 613 IPR000595 -
Dod03g1822 718 Gene3D Helix hairpin bin 410 473 - -
Dod03g1822 718 Pfam Cyclic nucleotide-binding domain 505 593 IPR000595 -
Dod03g1822 718 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 46 714 - -
Dod03g1822 718 SUPERFAMILY cAMP-binding domain-like 412 604 IPR018490 -
Dod03g1822 718 Gene3D Jelly Rolls 480 600 IPR014710 -
Dod03g1822 718 SUPERFAMILY Voltage-gated potassium channels 80 404 - -
Dod03g1822 718 CDD CAP_ED 482 613 IPR000595 -
Dod03g1822 718 Pfam Ion transport protein 86 409 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Dod03g1822 718 Gene3D - 89 407 - -
Dod03g1822 718 MobiDBLite consensus disorder prediction 696 718 - -
Dod03g1822 718 MobiDBLite consensus disorder prediction 696 711 - -
Dod03g1822 718 ProSiteProfiles cAMP/cGMP binding motif profile. 482 566 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1822 Dod-Chr3 29546103 29556344 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1822 1 717 Ion Channels AT4G30360 69.835 0.0 1026