Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1819 ATGCCAACCCTGAAGAGACGCCTTCCTTCTTCAGTTCCATTTCTGTCTTTTCTCTTCCTCTGCCTATGGGGAAGACCCTTCATGGCAGAGGAGGCCATACCAATAACAATACTAATACCATTAGGAGTAGTTCTTGATTTGAACTCCACAATTGGAAATACAGCCAATAGCTGCATATGGATGGCACACCAAGATTTCTATAAACACAATCGATATTACAAAACCAGACTTGATCTTCTAACCAAAGATTCCGGGGAAAATGTTGTCACAGCAGCAACTGCAGCTCAAGATTTAATTAAAAAGAAGGTGAATGCAATCATTGGACCACAAACTTCAGAACAAGCTTGGTTTGTTATAGAACTTGGGAGCAAGGCTCAAGTACCGATAATCTCGTTTTCTGCAACGAGTCCATCACTTTCCCCGACGCGGAAGCGGAACCATTATTTCATTCGTTTGGCACGGGATGATTCCTCACAGGTAGAAGCTATAGCTTCCGTTGTGAAAGCTTTTGGTTGGCGCGAAATCATCCCCGTATACCCAGACACGGAATATGGCAACGGTCTGATTCCATATCTTAATGACGCCTTCGTACAAATTGGCACACGGGTGCCTTACAGAAGCGTCATTGGAGCACGTGCTCTTGAGGCCGAAATTCGCAGTGAGATTCAGAAGCTAAAGGGGATGACAACAAGAGTGTTTCTTGTTCATATGGACGCTAAACTTGGGTGCAGATTCTTTCAAGCTGCAAAGAAAGCAGGGGTGATGACAGCAGGGTATGCATGGATGGTCACTGAAGGCTTATCGGCAGAGGTAGATCCTTCGGTGTTAAAATGCATGAACTCAATGCAAGGTGTGTTGGGAGTGAGGCCAGGTGCATACAATAACTCTAGTAGGCTTAAAGACTTCAAAGAAAGATGGAAAGCTTTGTCAGGTAAAACAAAGAGTGAGTCCGATGTGGTAAGCGTCTTTGGATTGCGGGCTTATGACGCCGTTTGGGCATTGGCGGAAGCAGTAGAGAAAGTTTGGGTGGCAAACTCTACCTTTCCTAAACAAAATGTTTCCCTTCTCAAGACAATTCTGGCAACTAAATTCTCAGGCCTCACTGGAGATATCAATTTGGTTAAAGGACAATTAGAGCCATCAACACTAGAAGTATTCAATGTGGTAGAACAAACAGAGAGGATTGTTGGTTATTGGATCCCAGGCCTAGGGACAGCAAGAGGACTTTCTAAACTCAAACAAGTAAGATGGCCTGGTAATACAACAAAGCGGCCACCAAAGCTGAGGATCGGGATCCCAATTAAAAAGGGCGTTAACGACTTCAAGAAAGTCAAGAACTTCTCTTTTGATGTCTTTTACGAAGTGTTGAGCGTCTTACCCTTTCCCCTGCCTTACAAGTTCGTCCCTTTCGAGAAAAATGGGGAGACTGCTGGGAATTATGATGAACTTGTGATGCAAATTCATGAAAAGAAGTACGATGCTGTTGTTGGAGATGTGACAATTGTAGCTAACCGCTCAAAGTATGTTGATTTTACAATGCCATTCTCAGAGTCCGGCGTGTCAATGTTGGTTTTGGCGAAGCATGATGACAGACGAAACATGTGGATTTTCCTGAAGCCATTGAGTTGGGATCTTTGGTTAGTAACTGGAGCAGCTATCCTTTTCACAGGTTTCATCATTTGGTTTATTGAACACCGCTCAAATTCCGAGTTCGGGGGCACCACAGAGAACCAATTTGGCAGGGTTCTCTGGTTTTCCTTCTCAACATTAGTCTTTGCTTACAGGGAAAAAATAGTGACCAATTGGGCAAGATTTGTGCTGATTATATGGGTCTTCGTGGTACTCATCATAACGCAAAGTTACACTGCAAGTTTAGCTTCACTATTAACTGTGCAAAAACTGCAGCCTGTGTTTATGGACGTAGAAGAGATCAAAAGTAATAATTACTTTGTGGGATATCAGAAGAAATCCTTTGTGAGAGGGCTACTAATAGAACATTTAGGATTAAATGAGTCTATGTTGATCGGTTACGACAGCCCCGAGGCCTATCATCAAGCACTGTCCCTCGGAAGCGACAATGGAGGGGTTGCAGCTATCTTTGATGAAATTTTCTTTATTAATCTCTTCTTAACCAAATATGGCTCTGGGAAGTATAAGATGGTTGGACCAACCTACAAAACGGATGGCTTGGGCTTCGCATTCCCACGAAATTCTCCACTGGTCGCTAGCATTTCAAGGGCAATCTTAAATATCACTCAAAATAAAACTAGGTTTGATGGGATTAAGAAAAGGTACTTCTCAAGCGACATCATAAGTAACACTGAAAGTGCCTCAATGTCCATAGATAGTCCAAATTTGACTGTCGAGAGCTTTGGAGGCCTTTTCATCATCTCATTGATCACTTCACTGCTCGCACTCCTGGTCCATTTGTTTAAGTTCTTACATTCAAAGTGGATGTCATGTCATGAGGACCATCAATTCTGCTCAGAGAGCCCTTTAGCAATGATGATTAAACTGGGAAAGCATTTCAACAAGCAGATCACTTTTTACAATCTTGTTCGAATGGGTAAGTTTTCACGATAG 2583 0.4282 MPTLKRRLPSSVPFLSFLFLCLWGRPFMAEEAIPITILIPLGVVLDLNSTIGNTANSCIWMAHQDFYKHNRYYKTRLDLLTKDSGENVVTAATAAQDLIKKKVNAIIGPQTSEQAWFVIELGSKAQVPIISFSATSPSLSPTRKRNHYFIRLARDDSSQVEAIASVVKAFGWREIIPVYPDTEYGNGLIPYLNDAFVQIGTRVPYRSVIGARALEAEIRSEIQKLKGMTTRVFLVHMDAKLGCRFFQAAKKAGVMTAGYAWMVTEGLSAEVDPSVLKCMNSMQGVLGVRPGAYNNSSRLKDFKERWKALSGKTKSESDVVSVFGLRAYDAVWALAEAVEKVWVANSTFPKQNVSLLKTILATKFSGLTGDINLVKGQLEPSTLEVFNVVEQTERIVGYWIPGLGTARGLSKLKQVRWPGNTTKRPPKLRIGIPIKKGVNDFKKVKNFSFDVFYEVLSVLPFPLPYKFVPFEKNGETAGNYDELVMQIHEKKYDAVVGDVTIVANRSKYVDFTMPFSESGVSMLVLAKHDDRRNMWIFLKPLSWDLWLVTGAAILFTGFIIWFIEHRSNSEFGGTTENQFGRVLWFSFSTLVFAYREKIVTNWARFVLIIWVFVVLIITQSYTASLASLLTVQKLQPVFMDVEEIKSNNYFVGYQKKSFVRGLLIEHLGLNESMLIGYDSPEAYHQALSLGSDNGGVAAIFDEIFFINLFLTKYGSGKYKMVGPTYKTDGLGFAFPRNSPLVASISRAILNITQNKTRFDGIKKRYFSSDIISNTESASMSIDSPNLTVESFGGLFIISLITSLLALLVHLFKFLHSKWMSCHEDHQFCSESPLAMMIKLGKHFNKQITFYNLVRMGKFSR* 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1819 860 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 816 - -
Dod03g1819 860 CDD PBP1_GABAb_receptor_plant 42 404 IPR044440 -
Dod03g1819 860 Gene3D - 534 660 - -
Dod03g1819 860 Coils Coil 211 231 - -
Dod03g1819 860 Gene3D - 423 533 - -
Dod03g1819 860 Pfam Receptor family ligand binding region 61 389 IPR001828 -
Dod03g1819 860 Pfam Bacterial extracellular solute-binding proteins, family 3 477 767 IPR001638 -
Dod03g1819 860 Gene3D - 60 161 - -
Dod03g1819 860 CDD GluR_Plant 427 756 - -
Dod03g1819 860 PANTHER GLUTAMATE RECEPTOR 39 816 - -
Dod03g1819 860 SUPERFAMILY Periplasmic binding protein-like I 39 419 IPR028082 -
Dod03g1819 860 Gene3D - 692 773 - -
Dod03g1819 860 SUPERFAMILY Periplasmic binding protein-like II 422 769 - -
Dod03g1819 860 SMART GluR_14 427 768 IPR001320 GO:0015276|GO:0016020
Dod03g1819 860 Pfam Ligand-gated ion channel 768 800 IPR001320 GO:0015276|GO:0016020
Dod03g1819 860 PIRSF IGluLR_plant 10 850 IPR017103 -
Dod03g1819 860 Gene3D - 162 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1819 Dod-Chr3 29326258 29329792 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1819 36 838 Ion Channels AT2G29120 41.315 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1819 K05387 - gmx:100800495 1094.34