Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1799 ATGTTACAGGATATGTACATTCGTGTTAAACGTTGTAAGACAACATACTTCATCAGGTGCAAGCCAACTGATAAAATTCTTGACATAAAGCAGAAGTTGCAAGAACTTGTTGATCAGCCTGCTAATAATCAAAGGTTAATTCTACCTGGTACAGGGGAAGTATTAGAGGATTCAAGGACTCTGGCAGATCAAAAGGTTGAAAATGATGCAGTTGTTGCACTGACCTTGAGAAAAGATGATAATGAGTTTGAGGAGGTCAACATTGTTCGGCCAAATGATTTCTACCAGGCACGGGATGCAGATGGTGCCAACTGGTAA 318 0.4025 MLQDMYIRVKRCKTTYFIRCKPTDKILDIKQKLQELVDQPANNQRLILPGTGEVLEDSRTLADQKVENDAVVALTLRKDDNEFEEVNIVRPNDFYQARDADGANW* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1799 105 ProSiteProfiles Ubiquitin domain profile. 5 81 IPR000626 GO:0005515
Dod03g1799 105 CDD Ubl_ubiquitin_like 7 74 - -
Dod03g1799 105 Pfam Ubiquitin family 8 78 IPR000626 GO:0005515
Dod03g1799 105 SMART ubq_7 5 77 IPR000626 GO:0005515
Dod03g1799 105 PANTHER OS03G0364000 PROTEIN 4 102 - -
Dod03g1799 105 SUPERFAMILY Ubiquitin-like 5 81 IPR029071 -
Dod03g1799 105 Gene3D - 3 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1799 Dod-Chr3 27594033 27598859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1799 15 77 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 36.508 5.98e-06 40.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1799 K03873 - gmx:100499885 199.519