Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1782 ATGCAGCCCTGTAGCAGAGAAATGCAAGGAATCAACTCCCTTCTAAACTCTTCTCAAATTTCTCTCCAGGACCTCCACAACAACCACCAGATCCAAAACTCCCACATGAACACCAACCACCAAAACCAACACCAGCAACTCGACCACGCCACAACGACCCCTCACTTCGACCCCAGTCCCCACGACGACTTCCTGGACCAAATGCTCTCCATCCTTCCCTCCTGCTCCTGGCCGGACCTCAACCCAAACAGGCCCCTCTGGGACCCAAACCATTCCCTCCACATCAGCAACACCAACACCGTCAACGCCCCAGACGTCAAGCCCACTGACCTCTCCGACGAAACGGCGCCGTCTAGCGCCGAGAATGTCACCTTCCCTTACGACGAACACGCCAGCCTGGCCTCCAAGTTCCGCAACCACCAGATCAGCGGCGCCTCTCCTACCGCCAAGGCCGCCGCCCTGATGCTTCAGCAGCAGCAGCAGCAGCTCCTCTTGTCCAGAGGCCTCGCCGGCGCCGACTCTGGCCTCCTCCAGATGCCGCTGTCCTTGGGCGGAAACGACGTCGTTGACGCGTCACCCTTCAAATCTCCCAATCCGGGTGCTGAGGCTTCAGTTCAAGCTCTGAACGGGTTCGCTGGATCTCTGCATGGCACCTGCCAAGCCTCGAACCAAACTCAGCATTTTCAACATCCTCAGGGAAGCTCGAATCCGATGCAGGGGCAGAATTTTGGGGCTTCTGGGGTAGGGGGTGCAACGAGCCAAGCTCCGGCGGGTGGCGCCCCGGCTCAACCGAAGCAAAGGGTTCGGGCCAGGAGAGGTCAAGCAACGGACCCACACAGCATTGCTGAAAGGTTACGAAGGGAGAGGATAGCGGAGAGAATGAAGGCTCTGCAGGAACTGGTTCCAAATGCCAACAAGACAGACAAGGCATCCATGCTTGATGAGATCATCGATTATGTGAAATTTCTACAGCTCCAAGTCAAAGTTCTGAGTATGAGCAGATTGGGCGGTGCAGCTGCTGTCGCTCCCCTTGTTGCCGATATGTCCTCCGAGGGAGGCGGTGACTGCATCCAAACAAACGGCAGGGGTAACGGCGTCGGGGCCCTACACCGAAACTCTAACGGCAATCAAACGACGGCGTCAACCTCAAACGACAGCCTCGCCATGACGGAGCACCAGGTGGCCAAGCTCATGGAAGAGGACATGGGCTCGGCCATGCAGTACCTTCAGGGAAAGGGCCTATGCCTAATGCCCATTTCCCTAGCCACAGCCATCTCCACCGCCGCGTGTCACACCCGAAACCCCTTGATCAACGGCGGCGCAAACAACCAGATTCCGACCACTAATGGCGGCGGAGTTGGCCACGCGAACCCCGCCGTGGGATCTAACGTCGAAGGTCCGTCTTCTCCTAACATGTCCGTGCTGACGGTGCAGTCGGTCACCGCGGGTAACGACGTCGCCGTCAAAGACGCTGCCTCCGTTTCGAAGCCGTGA 1494 0.583 MQPCSREMQGINSLLNSSQISLQDLHNNHQIQNSHMNTNHQNQHQQLDHATTTPHFDPSPHDDFLDQMLSILPSCSWPDLNPNRPLWDPNHSLHISNTNTVNAPDVKPTDLSDETAPSSAENVTFPYDEHASLASKFRNHQISGASPTAKAAALMLQQQQQQLLLSRGLAGADSGLLQMPLSLGGNDVVDASPFKSPNPGAEASVQALNGFAGSLHGTCQASNQTQHFQHPQGSSNPMQGQNFGASGVGGATSQAPAGGAPAQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGDCIQTNGRGNGVGALHRNSNGNQTTASTSNDSLAMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTAACHTRNPLINGGANNQIPTTNGGGVGHANPAVGSNVEGPSSPNMSVLTVQSVTAGNDVAVKDAASVSKP* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1782 497 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 274 323 IPR011598 GO:0046983
Dod03g1782 497 MobiDBLite consensus disorder prediction 38 53 - -
Dod03g1782 497 Gene3D - 269 331 IPR036638 GO:0046983
Dod03g1782 497 MobiDBLite consensus disorder prediction 224 249 - -
Dod03g1782 497 MobiDBLite consensus disorder prediction 224 281 - -
Dod03g1782 497 MobiDBLite consensus disorder prediction 38 62 - -
Dod03g1782 497 PANTHER TRANSCRIPTION FACTOR BHLH69 55 441 - -
Dod03g1782 497 MobiDBLite consensus disorder prediction 98 121 - -
Dod03g1782 497 SMART finulus 280 329 IPR011598 GO:0046983
Dod03g1782 497 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 55 441 - -
Dod03g1782 497 Pfam Helix-loop-helix DNA-binding domain 279 324 IPR011598 GO:0046983
Dod03g1782 497 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 272 334 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1782 Dod-Chr3 26712785 26717323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1782 260 496 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 61.417 5.36e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod03g1782 HLH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1782 - - gmx:100807286 585.489