Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1760 ATGGCTTTTCATGACCATCTACCACACGAAATCACTTTCCAACCTTTCACGGACGAGCAACAGTTAAGTCAGAACAGAGACATACAGAGGCTGATACCGTTCACTGCCGCAGCCGCCGCCGGCGGTGGCGCAGCGCCGACGTGGCTGAACAACTCGTCGAGCCTTCGGCAGCAGAATTTCCTGCACTTGCAGCCCGACGGTTCGGCTCGAAACGACGACGTTCGAGGCATGATGGCGTCGTCGGAGAAGAGCATGGATCGGAACCGGACGGAGAGCAACTGCGAGTCGGAGGATTTAGCGGAGTACAAGGCAGACATCCTGGGACACCCGCTCTACGACCAGCTGCTGTCGGCGCACGTTTCGTGTCTGAGGATCGCGACGCCGGTGGACCAGCTCCCGAGGATCGATGCTCAGTTGCAGCAGTCGCAGCTCGTGGTGGAGAAGTACGCTGGGCTTGGAAATAATGGCGTGGTCGATGACAAGGAGCTTGATCAGTTCATGACACATTATGTTCTATTGCTCTGCGCTTTTAAAGAACAATTGCAACAACATGTCCGTGTTCATGCTATGGAAGCAGTGATGGCTTGTTGGGAGCTCGAGCAGTCTCTACAAAGCTTAACTGGTGTATCTCCTGGAGAAGGAACGGGTGCAACAATGTCCGATGATGAAGATGATCAGGCTGAGAGCAACGCCAACTTGTACGAAGGAAGCCTGGATGGCGCTGATAGTCTCAGCTTTGGCCCTCTTGTTCCCACTGAAAGTGAAAGATCTCTGATGGAGCGTGTGCGGCAGGAGTTGAAGCATGAGCTAAAGCAGGGTTACAAGGACAAGATTGTGGACATAAGAGAAGAAATTCTACGAAAGAGAAGGGCCGGGAAACTTCCAGGGGACACCACCTCTCTTTTAAAAGCTTGGTGGCAATCACATGCTAAATGGCCCTATCCGACAGAAGAAGACAAGGCCAGGCTGGTGCAGGAAACAGGCTTGCAATTAAAGCAGATAAATAACTGGTTCATAAATCAAAGAAAAAGGAATTGGCATACTAATCCTTCGTCTTCTAGCGGCTCCAAAAGCAAGCGCAAGAGTAGTGGCGCAGGTGAAACAAGTAACCAGAGCTTCATGTGA 1125 0.5173 MAFHDHLPHEITFQPFTDEQQLSQNRDIQRLIPFTAAAAAGGGAAPTWLNNSSSLRQQNFLHLQPDGSARNDDVRGMMASSEKSMDRNRTESNCESEDLAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQLVVEKYAGLGNNGVVDDKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDEDDQAESNANLYEGSLDGADSLSFGPLVPTESERSLMERVRQELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSGSKSKRKSSGAGETSNQSFM* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1760 374 SMART ELK_2 265 286 IPR005539 GO:0003677
Dod03g1760 374 ProSiteProfiles ELK domain profile. 265 285 IPR005539 GO:0003677
Dod03g1760 374 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 37 367 - -
Dod03g1760 374 Pfam ELK domain 265 286 IPR005539 GO:0003677
Dod03g1760 374 Pfam KNOX2 domain 157 207 IPR005541 GO:0003677|GO:0005634
Dod03g1760 374 SUPERFAMILY Homeodomain-like 287 351 IPR009057 -
Dod03g1760 374 SMART KNOX2_2 153 208 IPR005541 GO:0003677|GO:0005634
Dod03g1760 374 Pfam KNOX1 domain 102 143 IPR005540 GO:0003677|GO:0005634
Dod03g1760 374 MobiDBLite consensus disorder prediction 208 227 - -
Dod03g1760 374 SMART KNOX1_2 100 144 IPR005540 GO:0003677|GO:0005634
Dod03g1760 374 Pfam Homeobox KN domain 305 344 IPR008422 GO:0003677|GO:0006355
Dod03g1760 374 CDD homeodomain 288 349 IPR001356 GO:0003677
Dod03g1760 374 SMART HOX_1 287 352 IPR001356 GO:0003677
Dod03g1760 374 Gene3D - 291 368 - -
Dod03g1760 374 ProSiteProfiles 'Homeobox' domain profile. 285 348 IPR001356 GO:0003677
Dod03g1760 374 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 37 367 - -
Dod03g1760 374 MobiDBLite consensus disorder prediction 342 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1760 Dod-Chr3 26146178 26154166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1760 48 369 Homeobox Transcription Factor Family AT5G11060 73.538 2.45e-165 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Dod03g1760 KNOX2 4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1760 - - gmx:100816347 651.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2077 05 46671098 46677767 Dod03g1760 03 26146178 26154166 PCT